Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4170 and GFF4171 are separated by 11 nucleotides GFF4171 and GFF4172 are separated by 41 nucleotides GFF4172 and GFF4173 are separated by 26 nucleotides
GFF4170 - Dihydroanticapsin 7-dehydrogenase, at 184,262 to 185,017
GFF4170
GFF4171 - 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase, at 185,029 to 185,790
GFF4171
GFF4172 - Long-chain-fatty-acid--CoA ligase FadD13, at 185,832 to 187,451
GFF4172
GFF4173 - HTH-type transcriptional regulator XynR, at 187,478 to 188,374
GFF4173
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -2
-1
0
1 at 184.841 kb on - strand, within GFF4170 at 185.093 kb on + strand at 185.093 kb on + strand at 185.093 kb on + strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.126 kb on - strand, within GFF4171 at 185.608 kb on - strand, within GFF4171 at 186.142 kb on + strand, within GFF4172 at 186.142 kb on + strand, within GFF4172 at 186.142 kb on + strand, within GFF4172 at 186.143 kb on - strand, within GFF4172 at 186.169 kb on + strand, within GFF4172 at 186.169 kb on + strand, within GFF4172 at 186.169 kb on + strand, within GFF4172 at 186.169 kb on + strand, within GFF4172 at 186.169 kb on + strand, within GFF4172 at 186.169 kb on + strand, within GFF4172 at 186.169 kb on + strand, within GFF4172 at 186.169 kb on + strand, within GFF4172 at 186.170 kb on - strand, within GFF4172 at 186.170 kb on - strand, within GFF4172 at 186.170 kb on - strand, within GFF4172 at 186.259 kb on + strand, within GFF4172 at 186.259 kb on + strand, within GFF4172 at 186.262 kb on + strand, within GFF4172 at 186.263 kb on - strand, within GFF4172 at 186.263 kb on - strand, within GFF4172 at 186.422 kb on - strand, within GFF4172 at 186.422 kb on - strand, within GFF4172 at 186.422 kb on - strand, within GFF4172 at 186.542 kb on - strand, within GFF4172 at 186.542 kb on - strand, within GFF4172 at 186.551 kb on - strand, within GFF4172 at 186.825 kb on + strand, within GFF4172 at 186.825 kb on + strand, within GFF4172 at 186.825 kb on + strand, within GFF4172 at 186.973 kb on + strand, within GFF4172 at 186.974 kb on - strand, within GFF4172 at 186.974 kb on - strand, within GFF4172 at 187.108 kb on + strand, within GFF4172 at 187.109 kb on - strand, within GFF4172 at 187.332 kb on - strand at 187.332 kb on - strand at 187.704 kb on + strand, within GFF4173 at 187.704 kb on + strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.705 kb on - strand, within GFF4173 at 187.725 kb on + strand, within GFF4173 at 187.726 kb on - strand, within GFF4173 at 187.785 kb on + strand, within GFF4173 at 188.079 kb on + strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.080 kb on - strand, within GFF4173 at 188.100 kb on + strand, within GFF4173 at 188.100 kb on + strand, within GFF4173 at 188.100 kb on + strand, within GFF4173
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 184,841 - GFF4170 0.77 +0.6 185,093 + +0.1 185,093 + +0.9 185,093 + -1.3 185,094 - -0.9 185,094 - +0.3 185,126 - GFF4171 0.13 -0.5 185,608 - GFF4171 0.76 +0.2 186,142 + GFF4172 0.19 -0.0 186,142 + GFF4172 0.19 +0.9 186,142 + GFF4172 0.19 -0.8 186,143 - GFF4172 0.19 +0.3 186,169 + GFF4172 0.21 +1.0 186,169 + GFF4172 0.21 +0.0 186,169 + GFF4172 0.21 +0.0 186,169 + GFF4172 0.21 +0.8 186,169 + GFF4172 0.21 -0.5 186,169 + GFF4172 0.21 +0.3 186,169 + GFF4172 0.21 +1.1 186,169 + GFF4172 0.21 +1.5 186,170 - GFF4172 0.21 +1.3 186,170 - GFF4172 0.21 -0.5 186,170 - GFF4172 0.21 -2.5 186,259 + GFF4172 0.26 -0.3 186,259 + GFF4172 0.26 -0.3 186,262 + GFF4172 0.27 -0.4 186,263 - GFF4172 0.27 -0.7 186,263 - GFF4172 0.27 -0.4 186,422 - GFF4172 0.36 +0.7 186,422 - GFF4172 0.36 -0.2 186,422 - GFF4172 0.36 +0.7 186,542 - GFF4172 0.44 -0.0 186,542 - GFF4172 0.44 +0.8 186,551 - GFF4172 0.44 +0.2 186,825 + GFF4172 0.61 +0.2 186,825 + GFF4172 0.61 -0.9 186,825 + GFF4172 0.61 +0.0 186,973 + GFF4172 0.70 -0.3 186,974 - GFF4172 0.70 +0.5 186,974 - GFF4172 0.70 -0.4 187,108 + GFF4172 0.79 -0.1 187,109 - GFF4172 0.79 -0.2 187,332 - +0.4 187,332 - -0.2 187,704 + GFF4173 0.25 +0.3 187,704 + GFF4173 0.25 +0.0 187,705 - GFF4173 0.25 -0.5 187,705 - GFF4173 0.25 +0.3 187,705 - GFF4173 0.25 -0.2 187,705 - GFF4173 0.25 -1.1 187,705 - GFF4173 0.25 -0.3 187,705 - GFF4173 0.25 +0.7 187,725 + GFF4173 0.28 -0.4 187,726 - GFF4173 0.28 +0.8 187,785 + GFF4173 0.34 +0.9 188,079 + GFF4173 0.67 +0.1 188,080 - GFF4173 0.67 -0.6 188,080 - GFF4173 0.67 +0.1 188,080 - GFF4173 0.67 +0.5 188,080 - GFF4173 0.67 +0.3 188,100 + GFF4173 0.69 -0.6 188,100 + GFF4173 0.69 -0.5 188,100 + GFF4173 0.69 +0.0
Or see this region's nucleotide sequence