Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4080 and GFF4081 are separated by 26 nucleotides GFF4081 and GFF4082 are separated by 3 nucleotides GFF4082 and GFF4083 are separated by 47 nucleotides
GFF4080 - 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)), at 72,437 to 73,432
GFF4080
GFF4081 - Gluconate 5-dehydrogenase, at 73,459 to 74,220
GFF4081
GFF4082 - Sulfopropanediol 3-dehydrogenase, at 74,224 to 75,537
GFF4082
GFF4083 - hypothetical protein, at 75,585 to 76,688
GFF4083
Position (kb) 74
75
76 Strain fitness (log2 ratio) -2
-1
0
1
2 at 73.302 kb on + strand, within GFF4080 at 73.302 kb on + strand, within GFF4080 at 73.302 kb on + strand, within GFF4080 at 73.416 kb on + strand at 73.416 kb on + strand at 73.416 kb on + strand at 73.417 kb on - strand at 73.417 kb on - strand at 73.417 kb on - strand at 73.460 kb on + strand at 73.460 kb on + strand at 73.508 kb on + strand at 73.508 kb on + strand at 73.508 kb on + strand at 73.509 kb on - strand at 73.534 kb on + strand at 73.749 kb on - strand, within GFF4081 at 73.749 kb on - strand, within GFF4081 at 74.110 kb on - strand, within GFF4081 at 74.110 kb on - strand, within GFF4081 at 74.204 kb on + strand at 74.430 kb on - strand, within GFF4082 at 74.525 kb on + strand, within GFF4082 at 74.525 kb on + strand, within GFF4082 at 74.526 kb on - strand, within GFF4082 at 74.526 kb on - strand, within GFF4082 at 74.592 kb on - strand, within GFF4082 at 74.648 kb on + strand, within GFF4082 at 74.975 kb on + strand, within GFF4082 at 74.975 kb on + strand, within GFF4082 at 74.975 kb on + strand, within GFF4082 at 74.975 kb on + strand, within GFF4082 at 74.976 kb on - strand, within GFF4082 at 74.976 kb on - strand, within GFF4082 at 74.976 kb on - strand, within GFF4082 at 75.047 kb on + strand, within GFF4082 at 75.048 kb on - strand, within GFF4082 at 75.056 kb on + strand, within GFF4082 at 75.056 kb on + strand, within GFF4082 at 75.056 kb on + strand, within GFF4082 at 75.056 kb on + strand, within GFF4082 at 75.056 kb on + strand, within GFF4082 at 75.057 kb on - strand, within GFF4082 at 75.057 kb on - strand, within GFF4082 at 75.057 kb on - strand, within GFF4082 at 75.143 kb on + strand, within GFF4082 at 75.143 kb on + strand, within GFF4082 at 75.143 kb on + strand, within GFF4082 at 75.143 kb on + strand, within GFF4082 at 75.144 kb on - strand, within GFF4082 at 75.144 kb on - strand, within GFF4082 at 75.182 kb on + strand, within GFF4082 at 75.182 kb on + strand, within GFF4082 at 75.183 kb on - strand, within GFF4082 at 75.183 kb on - strand, within GFF4082 at 75.413 kb on + strand at 75.413 kb on + strand at 75.413 kb on + strand at 75.525 kb on - strand at 75.540 kb on - strand at 75.586 kb on + strand at 75.668 kb on - strand at 75.865 kb on + strand, within GFF4083 at 75.865 kb on + strand, within GFF4083 at 75.865 kb on + strand, within GFF4083 at 75.865 kb on + strand, within GFF4083 at 75.865 kb on + strand, within GFF4083 at 75.865 kb on + strand, within GFF4083 at 75.866 kb on - strand, within GFF4083 at 75.932 kb on - strand, within GFF4083 at 75.932 kb on - strand, within GFF4083 at 76.069 kb on + strand, within GFF4083 at 76.069 kb on + strand, within GFF4083 at 76.075 kb on + strand, within GFF4083 at 76.076 kb on - strand, within GFF4083 at 76.076 kb on - strand, within GFF4083 at 76.106 kb on + strand, within GFF4083 at 76.207 kb on + strand, within GFF4083 at 76.208 kb on - strand, within GFF4083 at 76.511 kb on - strand, within GFF4083 at 76.511 kb on - strand, within GFF4083 at 76.511 kb on - strand, within GFF4083 at 76.511 kb on - strand, within GFF4083
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 73,302 + GFF4080 0.87 +0.0 73,302 + GFF4080 0.87 -1.9 73,302 + GFF4080 0.87 -1.5 73,416 + -0.2 73,416 + -1.1 73,416 + -0.5 73,417 - -0.1 73,417 - +0.5 73,417 - +1.0 73,460 + -0.2 73,460 + +0.2 73,508 + -0.8 73,508 + +0.4 73,508 + -0.1 73,509 - -0.0 73,534 + +0.6 73,749 - GFF4081 0.38 -0.3 73,749 - GFF4081 0.38 -0.2 74,110 - GFF4081 0.85 +0.3 74,110 - GFF4081 0.85 +0.5 74,204 + +0.3 74,430 - GFF4082 0.16 -0.0 74,525 + GFF4082 0.23 +0.0 74,525 + GFF4082 0.23 -0.0 74,526 - GFF4082 0.23 +0.3 74,526 - GFF4082 0.23 -0.9 74,592 - GFF4082 0.28 -0.2 74,648 + GFF4082 0.32 +0.5 74,975 + GFF4082 0.57 +0.6 74,975 + GFF4082 0.57 -0.5 74,975 + GFF4082 0.57 -0.8 74,975 + GFF4082 0.57 +0.6 74,976 - GFF4082 0.57 +0.0 74,976 - GFF4082 0.57 -0.2 74,976 - GFF4082 0.57 -0.4 75,047 + GFF4082 0.63 +0.3 75,048 - GFF4082 0.63 -0.5 75,056 + GFF4082 0.63 -0.2 75,056 + GFF4082 0.63 +0.5 75,056 + GFF4082 0.63 -0.4 75,056 + GFF4082 0.63 +0.5 75,056 + GFF4082 0.63 +0.6 75,057 - GFF4082 0.63 -1.5 75,057 - GFF4082 0.63 +0.3 75,057 - GFF4082 0.63 -2.1 75,143 + GFF4082 0.70 -1.3 75,143 + GFF4082 0.70 -0.0 75,143 + GFF4082 0.70 -0.3 75,143 + GFF4082 0.70 +0.2 75,144 - GFF4082 0.70 +0.5 75,144 - GFF4082 0.70 +0.1 75,182 + GFF4082 0.73 -1.1 75,182 + GFF4082 0.73 -0.3 75,183 - GFF4082 0.73 -0.3 75,183 - GFF4082 0.73 +0.3 75,413 + -0.9 75,413 + +1.8 75,413 + +0.5 75,525 - +0.2 75,540 - -0.4 75,586 + +0.1 75,668 - +0.3 75,865 + GFF4083 0.25 +0.3 75,865 + GFF4083 0.25 -0.9 75,865 + GFF4083 0.25 +0.5 75,865 + GFF4083 0.25 +0.4 75,865 + GFF4083 0.25 +0.2 75,865 + GFF4083 0.25 -0.1 75,866 - GFF4083 0.25 -0.3 75,932 - GFF4083 0.31 -0.6 75,932 - GFF4083 0.31 +0.4 76,069 + GFF4083 0.44 +0.8 76,069 + GFF4083 0.44 +0.4 76,075 + GFF4083 0.44 +0.2 76,076 - GFF4083 0.44 +0.8 76,076 - GFF4083 0.44 +0.7 76,106 + GFF4083 0.47 +0.3 76,207 + GFF4083 0.56 +0.2 76,208 - GFF4083 0.56 -0.2 76,511 - GFF4083 0.84 -0.5 76,511 - GFF4083 0.84 -0.3 76,511 - GFF4083 0.84 +0.5 76,511 - GFF4083 0.84 +0.7
Or see this region's nucleotide sequence