Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4043 and GFF4044 overlap by 4 nucleotides GFF4044 and GFF4045 are separated by 191 nucleotides GFF4045 and GFF4046 overlap by 4 nucleotides GFF4046 and GFF4047 overlap by 4 nucleotides
GFF4043 - hypothetical protein, at 26,331 to 26,876
GFF4043
GFF4044 - Alkyl hydroperoxide reductase E, at 26,873 to 27,427
GFF4044
GFF4045 - Nicotinate dehydrogenase subunit B, at 27,619 to 28,962
GFF4045
GFF4046 - Nicotinate dehydrogenase subunit A, at 28,959 to 29,453
GFF4046
GFF4047 - Nicotinate dehydrogenase subunit B, at 29,450 to 31,705
GFF4047
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1 at 26.761 kb on + strand, within GFF4043 at 26.788 kb on + strand, within GFF4043 at 26.789 kb on - strand, within GFF4043 at 26.797 kb on + strand, within GFF4043 at 26.797 kb on + strand, within GFF4043 at 26.889 kb on + strand at 26.889 kb on + strand at 26.890 kb on - strand at 26.890 kb on - strand at 26.890 kb on - strand at 27.000 kb on + strand, within GFF4044 at 27.000 kb on + strand, within GFF4044 at 27.001 kb on - strand, within GFF4044 at 27.001 kb on - strand, within GFF4044 at 27.001 kb on - strand, within GFF4044 at 27.073 kb on - strand, within GFF4044 at 27.081 kb on + strand, within GFF4044 at 27.082 kb on - strand, within GFF4044 at 27.237 kb on + strand, within GFF4044 at 27.237 kb on + strand, within GFF4044 at 27.238 kb on - strand, within GFF4044 at 27.238 kb on - strand, within GFF4044 at 27.282 kb on + strand, within GFF4044 at 27.282 kb on + strand, within GFF4044 at 27.283 kb on - strand, within GFF4044 at 27.524 kb on + strand at 27.524 kb on + strand at 27.525 kb on - strand at 27.549 kb on + strand at 27.682 kb on + strand at 27.682 kb on + strand at 27.701 kb on + strand at 27.862 kb on + strand, within GFF4045 at 27.863 kb on - strand, within GFF4045 at 27.863 kb on - strand, within GFF4045 at 27.985 kb on + strand, within GFF4045 at 28.096 kb on - strand, within GFF4045 at 28.312 kb on + strand, within GFF4045 at 28.372 kb on + strand, within GFF4045 at 28.372 kb on + strand, within GFF4045 at 28.373 kb on - strand, within GFF4045 at 28.398 kb on - strand, within GFF4045 at 28.483 kb on + strand, within GFF4045 at 28.484 kb on - strand, within GFF4045 at 28.843 kb on + strand at 28.844 kb on - strand at 29.025 kb on + strand, within GFF4046 at 29.025 kb on + strand, within GFF4046 at 29.025 kb on + strand, within GFF4046 at 29.026 kb on - strand, within GFF4046 at 29.026 kb on - strand, within GFF4046 at 29.254 kb on - strand, within GFF4046 at 29.466 kb on + strand at 29.466 kb on + strand at 29.466 kb on + strand at 29.467 kb on - strand at 29.795 kb on + strand, within GFF4047 at 29.796 kb on - strand, within GFF4047 at 29.796 kb on - strand, within GFF4047 at 29.796 kb on - strand, within GFF4047
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 26,761 + GFF4043 0.79 +0.4 26,788 + GFF4043 0.84 +0.5 26,789 - GFF4043 0.84 +0.4 26,797 + GFF4043 0.85 +0.8 26,797 + GFF4043 0.85 -1.0 26,889 + +0.4 26,889 + +0.7 26,890 - +0.3 26,890 - -0.0 26,890 - -0.3 27,000 + GFF4044 0.23 +0.8 27,000 + GFF4044 0.23 +0.9 27,001 - GFF4044 0.23 +0.3 27,001 - GFF4044 0.23 -0.8 27,001 - GFF4044 0.23 -0.1 27,073 - GFF4044 0.36 +0.1 27,081 + GFF4044 0.37 -0.1 27,082 - GFF4044 0.38 -0.1 27,237 + GFF4044 0.66 -0.1 27,237 + GFF4044 0.66 -0.3 27,238 - GFF4044 0.66 +0.1 27,238 - GFF4044 0.66 -1.0 27,282 + GFF4044 0.74 +0.1 27,282 + GFF4044 0.74 -1.1 27,283 - GFF4044 0.74 -0.6 27,524 + -0.8 27,524 + -0.8 27,525 - +0.1 27,549 + -1.0 27,682 + +0.1 27,682 + -1.1 27,701 + -0.5 27,862 + GFF4045 0.18 +0.5 27,863 - GFF4045 0.18 -1.9 27,863 - GFF4045 0.18 +0.2 27,985 + GFF4045 0.27 +0.5 28,096 - GFF4045 0.35 -0.1 28,312 + GFF4045 0.52 +0.0 28,372 + GFF4045 0.56 +0.5 28,372 + GFF4045 0.56 -0.2 28,373 - GFF4045 0.56 +0.8 28,398 - GFF4045 0.58 -0.4 28,483 + GFF4045 0.64 -0.1 28,484 - GFF4045 0.64 -0.1 28,843 + -1.5 28,844 - -0.9 29,025 + GFF4046 0.13 -1.2 29,025 + GFF4046 0.13 -0.5 29,025 + GFF4046 0.13 -1.9 29,026 - GFF4046 0.14 -0.2 29,026 - GFF4046 0.14 +0.9 29,254 - GFF4046 0.60 -1.3 29,466 + +0.6 29,466 + +0.3 29,466 + -0.3 29,467 - +0.5 29,795 + GFF4047 0.15 -0.3 29,796 - GFF4047 0.15 -0.4 29,796 - GFF4047 0.15 -0.8 29,796 - GFF4047 0.15 -1.4
Or see this region's nucleotide sequence