Strain Fitness in Xanthobacter sp. DMC5 around GFF4041

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4040 and GFF4041 are separated by 190 nucleotidesGFF4041 and GFF4042 are separated by 39 nucleotides GFF4040 - Non-heme chloroperoxidase, at 22,826 to 23,662 GFF4040 GFF4041 - putative inactive lipase, at 23,853 to 25,025 GFF4041 GFF4042 - hypothetical protein, at 25,065 to 26,300 GFF4042 Position (kb) 23 24 25 26Strain fitness (log2 ratio) -1 0 1at 22.905 kb on + strandat 22.905 kb on + strandat 22.905 kb on + strandat 22.905 kb on + strandat 22.905 kb on + strandat 22.906 kb on - strandat 22.959 kb on + strand, within GFF4040at 23.067 kb on + strand, within GFF4040at 23.067 kb on + strand, within GFF4040at 23.067 kb on + strand, within GFF4040at 23.157 kb on + strand, within GFF4040at 23.157 kb on + strand, within GFF4040at 23.158 kb on - strand, within GFF4040at 23.158 kb on - strand, within GFF4040at 23.158 kb on - strand, within GFF4040at 23.158 kb on - strand, within GFF4040at 23.158 kb on - strand, within GFF4040at 23.347 kb on - strand, within GFF4040at 23.347 kb on - strand, within GFF4040at 23.384 kb on - strand, within GFF4040at 23.439 kb on + strand, within GFF4040at 23.440 kb on - strand, within GFF4040at 23.622 kb on + strandat 23.782 kb on - strandat 23.782 kb on - strandat 23.782 kb on - strandat 23.784 kb on - strandat 23.811 kb on + strandat 23.811 kb on + strandat 23.813 kb on + strandat 23.813 kb on + strandat 23.813 kb on + strandat 23.813 kb on + strandat 23.832 kb on - strandat 23.832 kb on - strandat 23.840 kb on + strandat 23.980 kb on + strand, within GFF4041at 23.980 kb on + strand, within GFF4041at 23.980 kb on + strand, within GFF4041at 23.981 kb on - strand, within GFF4041at 23.981 kb on - strand, within GFF4041at 23.981 kb on - strand, within GFF4041at 23.981 kb on - strand, within GFF4041at 24.019 kb on + strand, within GFF4041at 24.019 kb on + strand, within GFF4041at 24.020 kb on - strand, within GFF4041at 24.175 kb on + strand, within GFF4041at 24.175 kb on + strand, within GFF4041at 24.176 kb on - strand, within GFF4041at 24.295 kb on + strand, within GFF4041at 24.296 kb on - strand, within GFF4041at 24.433 kb on + strand, within GFF4041at 24.433 kb on + strand, within GFF4041at 24.434 kb on - strand, within GFF4041at 24.586 kb on + strand, within GFF4041at 24.586 kb on + strand, within GFF4041at 24.586 kb on + strand, within GFF4041at 24.586 kb on + strand, within GFF4041at 24.844 kb on + strand, within GFF4041at 24.844 kb on + strand, within GFF4041at 24.845 kb on - strand, within GFF4041at 24.845 kb on - strand, within GFF4041at 24.947 kb on - strandat 25.666 kb on + strand, within GFF4042at 25.666 kb on + strand, within GFF4042

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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22,905 + -0.5
22,905 + +0.7
22,905 + -0.5
22,905 + -0.2
22,905 + +0.7
22,906 - +0.2
22,959 + GFF4040 0.16 +1.2
23,067 + GFF4040 0.29 -0.1
23,067 + GFF4040 0.29 -1.4
23,067 + GFF4040 0.29 +0.2
23,157 + GFF4040 0.40 +0.1
23,157 + GFF4040 0.40 -0.2
23,158 - GFF4040 0.40 -1.3
23,158 - GFF4040 0.40 +0.4
23,158 - GFF4040 0.40 -1.0
23,158 - GFF4040 0.40 -0.0
23,158 - GFF4040 0.40 +0.1
23,347 - GFF4040 0.62 -1.2
23,347 - GFF4040 0.62 -0.0
23,384 - GFF4040 0.67 -0.1
23,439 + GFF4040 0.73 -0.4
23,440 - GFF4040 0.73 +0.1
23,622 + -0.4
23,782 - -0.7
23,782 - -0.3
23,782 - +1.0
23,784 - -0.4
23,811 + -0.7
23,811 + -0.4
23,813 + -1.3
23,813 + -0.5
23,813 + +0.3
23,813 + +0.3
23,832 - -0.3
23,832 - -1.1
23,840 + -0.1
23,980 + GFF4041 0.11 +0.9
23,980 + GFF4041 0.11 +0.8
23,980 + GFF4041 0.11 +1.5
23,981 - GFF4041 0.11 +0.4
23,981 - GFF4041 0.11 +0.6
23,981 - GFF4041 0.11 +0.8
23,981 - GFF4041 0.11 +0.0
24,019 + GFF4041 0.14 -0.0
24,019 + GFF4041 0.14 -1.7
24,020 - GFF4041 0.14 -0.5
24,175 + GFF4041 0.27 -0.7
24,175 + GFF4041 0.27 -0.9
24,176 - GFF4041 0.28 -0.1
24,295 + GFF4041 0.38 +0.1
24,296 - GFF4041 0.38 -0.0
24,433 + GFF4041 0.49 -0.5
24,433 + GFF4041 0.49 +0.2
24,434 - GFF4041 0.50 -0.2
24,586 + GFF4041 0.62 -0.8
24,586 + GFF4041 0.62 -0.4
24,586 + GFF4041 0.62 +0.7
24,586 + GFF4041 0.62 -0.5
24,844 + GFF4041 0.84 -0.4
24,844 + GFF4041 0.84 -1.1
24,845 - GFF4041 0.85 -1.1
24,845 - GFF4041 0.85 +0.1
24,947 - +0.2
25,666 + GFF4042 0.49 -0.9
25,666 + GFF4042 0.49 +0.4

Or see this region's nucleotide sequence