Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4039 and GFF4040 are separated by 153 nucleotides GFF4040 and GFF4041 are separated by 190 nucleotides
GFF4039 - Sodium, potassium, lithium and rubidium/H(+) antiporter, at 21,032 to 22,672
GFF4039
GFF4040 - Non-heme chloroperoxidase, at 22,826 to 23,662
GFF4040
GFF4041 - putative inactive lipase, at 23,853 to 25,025
GFF4041
Position (kb) 22
23
24 Strain fitness (log2 ratio) -1
0
1 at 21.981 kb on + strand, within GFF4039 at 21.981 kb on + strand, within GFF4039 at 21.981 kb on + strand, within GFF4039 at 21.982 kb on - strand, within GFF4039 at 21.982 kb on - strand, within GFF4039 at 22.656 kb on + strand at 22.656 kb on + strand at 22.656 kb on + strand at 22.656 kb on + strand at 22.905 kb on + strand at 22.905 kb on + strand at 22.905 kb on + strand at 22.905 kb on + strand at 22.905 kb on + strand at 22.906 kb on - strand at 22.959 kb on + strand, within GFF4040 at 23.067 kb on + strand, within GFF4040 at 23.067 kb on + strand, within GFF4040 at 23.067 kb on + strand, within GFF4040 at 23.157 kb on + strand, within GFF4040 at 23.157 kb on + strand, within GFF4040 at 23.158 kb on - strand, within GFF4040 at 23.158 kb on - strand, within GFF4040 at 23.158 kb on - strand, within GFF4040 at 23.158 kb on - strand, within GFF4040 at 23.158 kb on - strand, within GFF4040 at 23.347 kb on - strand, within GFF4040 at 23.347 kb on - strand, within GFF4040 at 23.384 kb on - strand, within GFF4040 at 23.439 kb on + strand, within GFF4040 at 23.440 kb on - strand, within GFF4040 at 23.622 kb on + strand at 23.782 kb on - strand at 23.782 kb on - strand at 23.782 kb on - strand at 23.784 kb on - strand at 23.811 kb on + strand at 23.811 kb on + strand at 23.813 kb on + strand at 23.813 kb on + strand at 23.813 kb on + strand at 23.813 kb on + strand at 23.832 kb on - strand at 23.832 kb on - strand at 23.840 kb on + strand at 23.980 kb on + strand, within GFF4041 at 23.980 kb on + strand, within GFF4041 at 23.980 kb on + strand, within GFF4041 at 23.981 kb on - strand, within GFF4041 at 23.981 kb on - strand, within GFF4041 at 23.981 kb on - strand, within GFF4041 at 23.981 kb on - strand, within GFF4041 at 24.019 kb on + strand, within GFF4041 at 24.019 kb on + strand, within GFF4041 at 24.020 kb on - strand, within GFF4041 at 24.175 kb on + strand, within GFF4041 at 24.175 kb on + strand, within GFF4041 at 24.176 kb on - strand, within GFF4041 at 24.295 kb on + strand, within GFF4041 at 24.296 kb on - strand, within GFF4041 at 24.433 kb on + strand, within GFF4041 at 24.433 kb on + strand, within GFF4041 at 24.434 kb on - strand, within GFF4041 at 24.586 kb on + strand, within GFF4041 at 24.586 kb on + strand, within GFF4041 at 24.586 kb on + strand, within GFF4041 at 24.586 kb on + strand, within GFF4041
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 21,981 + GFF4039 0.58 -0.1 21,981 + GFF4039 0.58 -0.1 21,981 + GFF4039 0.58 -0.3 21,982 - GFF4039 0.58 -0.0 21,982 - GFF4039 0.58 -1.5 22,656 + +0.1 22,656 + -0.7 22,656 + -0.1 22,656 + -0.1 22,905 + -0.5 22,905 + +0.7 22,905 + -0.5 22,905 + -0.2 22,905 + +0.7 22,906 - +0.2 22,959 + GFF4040 0.16 +1.2 23,067 + GFF4040 0.29 -0.1 23,067 + GFF4040 0.29 -1.4 23,067 + GFF4040 0.29 +0.2 23,157 + GFF4040 0.40 +0.1 23,157 + GFF4040 0.40 -0.2 23,158 - GFF4040 0.40 -1.3 23,158 - GFF4040 0.40 +0.4 23,158 - GFF4040 0.40 -1.0 23,158 - GFF4040 0.40 -0.0 23,158 - GFF4040 0.40 +0.1 23,347 - GFF4040 0.62 -1.2 23,347 - GFF4040 0.62 -0.0 23,384 - GFF4040 0.67 -0.1 23,439 + GFF4040 0.73 -0.4 23,440 - GFF4040 0.73 +0.1 23,622 + -0.4 23,782 - -0.7 23,782 - -0.3 23,782 - +1.0 23,784 - -0.4 23,811 + -0.7 23,811 + -0.4 23,813 + -1.3 23,813 + -0.5 23,813 + +0.3 23,813 + +0.3 23,832 - -0.3 23,832 - -1.1 23,840 + -0.1 23,980 + GFF4041 0.11 +0.9 23,980 + GFF4041 0.11 +0.8 23,980 + GFF4041 0.11 +1.5 23,981 - GFF4041 0.11 +0.4 23,981 - GFF4041 0.11 +0.6 23,981 - GFF4041 0.11 +0.8 23,981 - GFF4041 0.11 +0.0 24,019 + GFF4041 0.14 -0.0 24,019 + GFF4041 0.14 -1.7 24,020 - GFF4041 0.14 -0.5 24,175 + GFF4041 0.27 -0.7 24,175 + GFF4041 0.27 -0.9 24,176 - GFF4041 0.28 -0.1 24,295 + GFF4041 0.38 +0.1 24,296 - GFF4041 0.38 -0.0 24,433 + GFF4041 0.49 -0.5 24,433 + GFF4041 0.49 +0.2 24,434 - GFF4041 0.50 -0.2 24,586 + GFF4041 0.62 -0.8 24,586 + GFF4041 0.62 -0.4 24,586 + GFF4041 0.62 +0.7 24,586 + GFF4041 0.62 -0.5
Or see this region's nucleotide sequence