Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4030 and GFF4031 are separated by 27 nucleotides GFF4031 and GFF4032 are separated by 97 nucleotides GFF4032 and GFF4033 are separated by 252 nucleotides
GFF4030 - Cation/acetate symporter ActP, at 13,283 to 14,947
GFF4030
GFF4031 - hypothetical protein, at 14,975 to 15,391
GFF4031
GFF4032 - hypothetical protein, at 15,489 to 15,776
GFF4032
GFF4033 - HTH-type transcriptional activator RhaS, at 16,029 to 16,580
GFF4033
Position (kb) 14
15
16 Strain fitness (log2 ratio) -1
0
1
2 at 14.234 kb on + strand, within GFF4030 at 14.235 kb on - strand, within GFF4030 at 14.471 kb on + strand, within GFF4030 at 14.471 kb on + strand, within GFF4030 at 14.471 kb on + strand, within GFF4030 at 14.798 kb on + strand at 14.820 kb on - strand at 14.824 kb on - strand at 14.980 kb on + strand at 14.980 kb on + strand at 14.980 kb on + strand at 14.981 kb on - strand at 14.981 kb on - strand at 15.000 kb on - strand at 15.000 kb on - strand at 15.000 kb on - strand at 15.000 kb on - strand at 15.176 kb on + strand, within GFF4031 at 15.177 kb on - strand, within GFF4031 at 15.177 kb on - strand, within GFF4031 at 15.177 kb on - strand, within GFF4031 at 15.218 kb on + strand, within GFF4031 at 15.248 kb on + strand, within GFF4031 at 15.248 kb on + strand, within GFF4031 at 15.248 kb on + strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.336 kb on - strand, within GFF4031 at 15.559 kb on + strand, within GFF4032 at 15.559 kb on + strand, within GFF4032 at 15.560 kb on - strand, within GFF4032 at 15.562 kb on + strand, within GFF4032 at 15.562 kb on + strand, within GFF4032 at 15.562 kb on + strand, within GFF4032 at 15.562 kb on + strand, within GFF4032 at 15.563 kb on - strand, within GFF4032 at 15.667 kb on + strand, within GFF4032 at 15.667 kb on + strand, within GFF4032 at 15.668 kb on - strand, within GFF4032 at 15.668 kb on - strand, within GFF4032 at 15.668 kb on - strand, within GFF4032 at 15.761 kb on + strand at 15.762 kb on - strand at 15.762 kb on - strand at 15.815 kb on + strand at 15.832 kb on - strand at 15.835 kb on - strand at 16.031 kb on - strand at 16.031 kb on - strand at 16.143 kb on + strand, within GFF4033 at 16.143 kb on + strand, within GFF4033 at 16.144 kb on - strand, within GFF4033 at 16.144 kb on - strand, within GFF4033 at 16.258 kb on + strand, within GFF4033 at 16.258 kb on + strand, within GFF4033 at 16.258 kb on + strand, within GFF4033 at 16.258 kb on + strand, within GFF4033 at 16.259 kb on - strand, within GFF4033 at 16.259 kb on - strand, within GFF4033 at 16.259 kb on - strand, within GFF4033 at 16.363 kb on + strand, within GFF4033 at 16.364 kb on - strand, within GFF4033
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 14,234 + GFF4030 0.57 +0.3 14,235 - GFF4030 0.57 -0.2 14,471 + GFF4030 0.71 -0.4 14,471 + GFF4030 0.71 +0.1 14,471 + GFF4030 0.71 -1.1 14,798 + -0.6 14,820 - -0.4 14,824 - -1.0 14,980 + +0.3 14,980 + +0.4 14,980 + -0.4 14,981 - -0.6 14,981 - +0.1 15,000 - +0.3 15,000 - +0.2 15,000 - -0.1 15,000 - +0.1 15,176 + GFF4031 0.48 -1.2 15,177 - GFF4031 0.48 -0.5 15,177 - GFF4031 0.48 -0.2 15,177 - GFF4031 0.48 -0.7 15,218 + GFF4031 0.58 +0.2 15,248 + GFF4031 0.65 +0.6 15,248 + GFF4031 0.65 +0.2 15,248 + GFF4031 0.65 +0.6 15,249 - GFF4031 0.66 -1.2 15,249 - GFF4031 0.66 -0.0 15,249 - GFF4031 0.66 -0.2 15,249 - GFF4031 0.66 +0.2 15,249 - GFF4031 0.66 +0.5 15,249 - GFF4031 0.66 -0.3 15,336 - GFF4031 0.87 +0.1 15,559 + GFF4032 0.24 -0.2 15,559 + GFF4032 0.24 -0.5 15,560 - GFF4032 0.25 -0.1 15,562 + GFF4032 0.25 -0.2 15,562 + GFF4032 0.25 -1.3 15,562 + GFF4032 0.25 -0.3 15,562 + GFF4032 0.25 -0.6 15,563 - GFF4032 0.26 +0.2 15,667 + GFF4032 0.62 +1.2 15,667 + GFF4032 0.62 -0.4 15,668 - GFF4032 0.62 -0.4 15,668 - GFF4032 0.62 +0.6 15,668 - GFF4032 0.62 +0.2 15,761 + +0.2 15,762 - -0.5 15,762 - +1.9 15,815 + +0.3 15,832 - -0.2 15,835 - -0.0 16,031 - -0.7 16,031 - +0.4 16,143 + GFF4033 0.21 -0.6 16,143 + GFF4033 0.21 -1.0 16,144 - GFF4033 0.21 -0.0 16,144 - GFF4033 0.21 -0.5 16,258 + GFF4033 0.41 -0.2 16,258 + GFF4033 0.41 +0.1 16,258 + GFF4033 0.41 +0.3 16,258 + GFF4033 0.41 +0.9 16,259 - GFF4033 0.42 +0.2 16,259 - GFF4033 0.42 +0.5 16,259 - GFF4033 0.42 +1.0 16,363 + GFF4033 0.61 +0.1 16,364 - GFF4033 0.61 -0.4
Or see this region's nucleotide sequence