Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4022 and GFF4023 are separated by 39 nucleotides GFF4023 and GFF4024 overlap by 4 nucleotides GFF4024 and GFF4025 overlap by 4 nucleotides
GFF4022 - Betaine aldehyde dehydrogenase, at 5,777 to 7,318
GFF4022
GFF4023 - High-affinity branched-chain amino acid transport system permease protein LivH, at 7,358 to 8,209
GFF4023
GFF4024 - hypothetical protein, at 8,206 to 9,195
GFF4024
GFF4025 - Lipopolysaccharide export system ATP-binding protein LptB, at 9,192 to 9,941
GFF4025
Position (kb) 7
8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 6.629 kb on + strand, within GFF4022 at 6.630 kb on - strand, within GFF4022 at 6.630 kb on - strand, within GFF4022 at 6.630 kb on - strand, within GFF4022 at 6.707 kb on + strand, within GFF4022 at 6.708 kb on - strand, within GFF4022 at 6.708 kb on - strand, within GFF4022 at 6.708 kb on - strand, within GFF4022 at 6.708 kb on - strand, within GFF4022 at 6.914 kb on + strand, within GFF4022 at 6.914 kb on + strand, within GFF4022 at 6.914 kb on + strand, within GFF4022 at 6.915 kb on - strand, within GFF4022 at 6.915 kb on - strand, within GFF4022 at 7.049 kb on + strand, within GFF4022 at 7.230 kb on - strand at 7.230 kb on - strand at 7.496 kb on + strand, within GFF4023 at 7.496 kb on + strand, within GFF4023 at 8.132 kb on + strand at 8.132 kb on + strand at 8.133 kb on - strand at 8.133 kb on - strand at 8.287 kb on + strand at 8.287 kb on + strand at 8.287 kb on + strand at 8.287 kb on + strand at 8.287 kb on + strand at 8.288 kb on - strand at 8.288 kb on - strand at 8.317 kb on + strand, within GFF4024 at 8.317 kb on + strand, within GFF4024 at 8.408 kb on - strand, within GFF4024 at 8.590 kb on + strand, within GFF4024 at 8.591 kb on - strand, within GFF4024 at 8.591 kb on - strand, within GFF4024 at 8.668 kb on + strand, within GFF4024 at 8.669 kb on - strand, within GFF4024 at 8.669 kb on - strand, within GFF4024 at 8.672 kb on - strand, within GFF4024 at 8.791 kb on + strand, within GFF4024 at 8.792 kb on - strand, within GFF4024 at 8.821 kb on + strand, within GFF4024 at 8.821 kb on + strand, within GFF4024 at 8.822 kb on - strand, within GFF4024 at 8.822 kb on - strand, within GFF4024 at 8.822 kb on - strand, within GFF4024 at 8.863 kb on + strand, within GFF4024 at 8.864 kb on - strand, within GFF4024 at 8.864 kb on - strand, within GFF4024 at 8.864 kb on - strand, within GFF4024 at 8.864 kb on - strand, within GFF4024 at 8.930 kb on + strand, within GFF4024 at 8.930 kb on + strand, within GFF4024 at 8.930 kb on + strand, within GFF4024 at 8.931 kb on - strand, within GFF4024 at 9.019 kb on + strand, within GFF4024 at 9.020 kb on - strand, within GFF4024 at 9.021 kb on + strand, within GFF4024 at 9.021 kb on + strand, within GFF4024
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 6,629 + GFF4022 0.55 -0.1 6,630 - GFF4022 0.55 -0.7 6,630 - GFF4022 0.55 +0.4 6,630 - GFF4022 0.55 -0.6 6,707 + GFF4022 0.60 -0.6 6,708 - GFF4022 0.60 +0.9 6,708 - GFF4022 0.60 -0.2 6,708 - GFF4022 0.60 -0.0 6,708 - GFF4022 0.60 +0.2 6,914 + GFF4022 0.74 +0.5 6,914 + GFF4022 0.74 +0.1 6,914 + GFF4022 0.74 +0.7 6,915 - GFF4022 0.74 +0.4 6,915 - GFF4022 0.74 +0.7 7,049 + GFF4022 0.82 -0.2 7,230 - +0.9 7,230 - +0.8 7,496 + GFF4023 0.16 +0.8 7,496 + GFF4023 0.16 +0.1 8,132 + -0.4 8,132 + +0.5 8,133 - -0.3 8,133 - -0.7 8,287 + -0.9 8,287 + -0.4 8,287 + -1.2 8,287 + +0.3 8,287 + -3.1 8,288 - -0.4 8,288 - +0.3 8,317 + GFF4024 0.11 +0.1 8,317 + GFF4024 0.11 +0.9 8,408 - GFF4024 0.20 -0.5 8,590 + GFF4024 0.39 +0.4 8,591 - GFF4024 0.39 -0.3 8,591 - GFF4024 0.39 +0.5 8,668 + GFF4024 0.47 +0.0 8,669 - GFF4024 0.47 +0.8 8,669 - GFF4024 0.47 +1.7 8,672 - GFF4024 0.47 +0.2 8,791 + GFF4024 0.59 -0.4 8,792 - GFF4024 0.59 +0.8 8,821 + GFF4024 0.62 +0.1 8,821 + GFF4024 0.62 +1.2 8,822 - GFF4024 0.62 +1.5 8,822 - GFF4024 0.62 -0.1 8,822 - GFF4024 0.62 +0.2 8,863 + GFF4024 0.66 -0.5 8,864 - GFF4024 0.66 +0.5 8,864 - GFF4024 0.66 -0.6 8,864 - GFF4024 0.66 +0.0 8,864 - GFF4024 0.66 -0.7 8,930 + GFF4024 0.73 +1.2 8,930 + GFF4024 0.73 +0.2 8,930 + GFF4024 0.73 -1.3 8,931 - GFF4024 0.73 +0.6 9,019 + GFF4024 0.82 +0.1 9,020 - GFF4024 0.82 +0.0 9,021 + GFF4024 0.82 +1.1 9,021 + GFF4024 0.82 -0.1
Or see this region's nucleotide sequence