Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4013 and GFF4014 are separated by 199 nucleotides GFF4014 and GFF4015 overlap by 4 nucleotides GFF4015 and GFF4016 are separated by 71 nucleotides
GFF4013 - hypothetical protein, at 388,368 to 388,994
GFF4013
GFF4014 - Transcriptional regulatory protein OmpR, at 389,194 to 389,916
GFF4014
GFF4015 - Sensor histidine kinase RcsC, at 389,913 to 391,262
GFF4015
GFF4016 - putative 3-hydroxybutyryl-CoA dehydrogenase, at 391,334 to 392,215
GFF4016
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -1
0
1 at 389.065 kb on - strand at 389.065 kb on - strand at 389.070 kb on + strand at 389.070 kb on + strand at 389.168 kb on + strand at 389.264 kb on - strand at 389.497 kb on + strand, within GFF4014 at 389.497 kb on + strand, within GFF4014 at 390.306 kb on - strand, within GFF4015 at 390.900 kb on + strand, within GFF4015 at 390.900 kb on + strand, within GFF4015 at 390.901 kb on - strand, within GFF4015 at 390.901 kb on - strand, within GFF4015 at 391.371 kb on + strand at 391.371 kb on + strand at 391.371 kb on + strand at 391.372 kb on - strand at 391.372 kb on - strand at 391.416 kb on + strand at 391.417 kb on - strand at 391.496 kb on - strand, within GFF4016 at 391.596 kb on + strand, within GFF4016 at 391.597 kb on - strand, within GFF4016 at 391.597 kb on - strand, within GFF4016 at 391.597 kb on - strand, within GFF4016 at 391.605 kb on + strand, within GFF4016 at 391.605 kb on + strand, within GFF4016 at 391.605 kb on + strand, within GFF4016 at 391.606 kb on - strand, within GFF4016 at 391.606 kb on - strand, within GFF4016 at 391.677 kb on + strand, within GFF4016 at 391.677 kb on + strand, within GFF4016 at 391.677 kb on + strand, within GFF4016 at 391.677 kb on + strand, within GFF4016 at 391.677 kb on + strand, within GFF4016 at 391.677 kb on + strand, within GFF4016 at 391.677 kb on + strand, within GFF4016 at 391.678 kb on - strand, within GFF4016 at 391.678 kb on - strand, within GFF4016 at 391.678 kb on - strand, within GFF4016
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 389,065 - +0.5 389,065 - +0.8 389,070 + +0.1 389,070 + -0.2 389,168 + -0.1 389,264 - -0.2 389,497 + GFF4014 0.42 +0.5 389,497 + GFF4014 0.42 +1.5 390,306 - GFF4015 0.29 -0.4 390,900 + GFF4015 0.73 -0.0 390,900 + GFF4015 0.73 -0.1 390,901 - GFF4015 0.73 -0.8 390,901 - GFF4015 0.73 -0.5 391,371 + +0.4 391,371 + +0.5 391,371 + -0.5 391,372 - -0.6 391,372 - +0.1 391,416 + +0.1 391,417 - -0.4 391,496 - GFF4016 0.18 +0.5 391,596 + GFF4016 0.30 +0.1 391,597 - GFF4016 0.30 +0.2 391,597 - GFF4016 0.30 -0.6 391,597 - GFF4016 0.30 -0.3 391,605 + GFF4016 0.31 -0.2 391,605 + GFF4016 0.31 +0.1 391,605 + GFF4016 0.31 -0.5 391,606 - GFF4016 0.31 +0.6 391,606 - GFF4016 0.31 +0.1 391,677 + GFF4016 0.39 +0.6 391,677 + GFF4016 0.39 +0.3 391,677 + GFF4016 0.39 -0.4 391,677 + GFF4016 0.39 +0.5 391,677 + GFF4016 0.39 +0.3 391,677 + GFF4016 0.39 +0.2 391,677 + GFF4016 0.39 -0.5 391,678 - GFF4016 0.39 -0.0 391,678 - GFF4016 0.39 -0.2 391,678 - GFF4016 0.39 +0.2
Or see this region's nucleotide sequence