Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3986 and GFF3987 are separated by 105 nucleotides GFF3987 and GFF3988 are separated by 52 nucleotides GFF3988 and GFF3989 are separated by 166 nucleotides
GFF3986 - Isoleucine--tRNA ligase, at 355,617 to 358,646
GFF3986
GFF3987 - Lipoprotein signal peptidase, at 358,752 to 359,282
GFF3987
GFF3988 - hypothetical protein, at 359,335 to 360,060
GFF3988
GFF3989 - putative zinc protease, at 360,227 to 361,597
GFF3989
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 358.620 kb on + strand at 358.693 kb on + strand at 358.693 kb on + strand at 359.287 kb on + strand at 360.151 kb on + strand at 360.151 kb on + strand at 360.151 kb on + strand at 360.380 kb on + strand, within GFF3989 at 360.540 kb on - strand, within GFF3989 at 360.548 kb on + strand, within GFF3989 at 360.734 kb on + strand, within GFF3989 at 360.734 kb on + strand, within GFF3989 at 360.735 kb on - strand, within GFF3989 at 360.735 kb on - strand, within GFF3989 at 360.818 kb on + strand, within GFF3989 at 360.818 kb on + strand, within GFF3989 at 360.819 kb on - strand, within GFF3989 at 360.819 kb on - strand, within GFF3989 at 360.830 kb on + strand, within GFF3989 at 360.830 kb on + strand, within GFF3989 at 360.831 kb on - strand, within GFF3989 at 360.908 kb on + strand, within GFF3989 at 360.908 kb on + strand, within GFF3989 at 360.908 kb on + strand, within GFF3989
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 358,620 + -0.6 358,693 + +0.4 358,693 + -2.8 359,287 + +0.0 360,151 + -0.3 360,151 + +0.5 360,151 + -0.3 360,380 + GFF3989 0.11 +0.9 360,540 - GFF3989 0.23 +0.2 360,548 + GFF3989 0.23 +1.3 360,734 + GFF3989 0.37 +0.9 360,734 + GFF3989 0.37 +0.4 360,735 - GFF3989 0.37 +1.2 360,735 - GFF3989 0.37 +0.9 360,818 + GFF3989 0.43 +1.1 360,818 + GFF3989 0.43 +0.5 360,819 - GFF3989 0.43 +1.4 360,819 - GFF3989 0.43 +0.8 360,830 + GFF3989 0.44 +0.6 360,830 + GFF3989 0.44 +0.5 360,831 - GFF3989 0.44 +1.4 360,908 + GFF3989 0.50 +1.2 360,908 + GFF3989 0.50 +1.4 360,908 + GFF3989 0.50 -0.5
Or see this region's nucleotide sequence