Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3957 and GFF3958 are separated by 217 nucleotides GFF3958 and GFF3959 are separated by 93 nucleotides
GFF3957 - Regulator of RpoS, at 325,206 to 325,931
GFF3957
GFF3958 - hypothetical protein, at 326,149 to 328,053
GFF3958
GFF3959 - Murein hydrolase activator EnvC, at 328,147 to 329,535
GFF3959
Position (kb) 326
327
328
329 Strain fitness (log2 ratio) -1
0
1
2 at 325.254 kb on - strand at 325.351 kb on + strand, within GFF3957 at 325.352 kb on - strand, within GFF3957 at 325.597 kb on - strand, within GFF3957 at 325.597 kb on - strand, within GFF3957 at 326.024 kb on + strand at 326.024 kb on + strand at 326.025 kb on - strand at 326.312 kb on - strand at 326.312 kb on - strand at 326.389 kb on + strand, within GFF3958 at 326.389 kb on + strand, within GFF3958 at 326.390 kb on - strand, within GFF3958 at 326.390 kb on - strand, within GFF3958 at 326.461 kb on + strand, within GFF3958 at 326.501 kb on - strand, within GFF3958 at 326.501 kb on - strand, within GFF3958 at 326.555 kb on - strand, within GFF3958 at 327.113 kb on - strand, within GFF3958 at 327.113 kb on - strand, within GFF3958 at 327.115 kb on + strand, within GFF3958 at 327.115 kb on + strand, within GFF3958 at 327.116 kb on - strand, within GFF3958 at 327.116 kb on - strand, within GFF3958 at 327.374 kb on - strand, within GFF3958 at 327.374 kb on - strand, within GFF3958 at 327.643 kb on + strand, within GFF3958 at 327.644 kb on - strand, within GFF3958 at 327.787 kb on + strand, within GFF3958 at 327.788 kb on - strand, within GFF3958 at 327.788 kb on - strand, within GFF3958 at 327.788 kb on - strand, within GFF3958 at 327.817 kb on + strand, within GFF3958 at 327.817 kb on + strand, within GFF3958 at 327.817 kb on + strand, within GFF3958 at 327.817 kb on + strand, within GFF3958 at 327.817 kb on + strand, within GFF3958 at 327.817 kb on + strand, within GFF3958 at 327.817 kb on + strand, within GFF3958 at 327.818 kb on - strand, within GFF3958 at 327.818 kb on - strand, within GFF3958 at 327.818 kb on - strand, within GFF3958 at 327.818 kb on - strand, within GFF3958 at 327.818 kb on - strand, within GFF3958 at 327.818 kb on - strand, within GFF3958 at 327.823 kb on + strand, within GFF3958 at 327.829 kb on + strand, within GFF3958 at 327.830 kb on - strand, within GFF3958 at 327.862 kb on + strand, within GFF3958 at 327.863 kb on - strand at 327.863 kb on - strand at 327.872 kb on - strand at 327.872 kb on - strand at 327.934 kb on - strand at 327.934 kb on - strand at 327.934 kb on - strand at 327.934 kb on - strand at 328.030 kb on + strand at 328.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 325,254 - +0.1 325,351 + GFF3957 0.20 -0.2 325,352 - GFF3957 0.20 +0.3 325,597 - GFF3957 0.54 +0.1 325,597 - GFF3957 0.54 -0.2 326,024 + +1.5 326,024 + -0.7 326,025 - -0.4 326,312 - -0.1 326,312 - +0.5 326,389 + GFF3958 0.13 -0.3 326,389 + GFF3958 0.13 -0.5 326,390 - GFF3958 0.13 +0.0 326,390 - GFF3958 0.13 -0.9 326,461 + GFF3958 0.16 -0.4 326,501 - GFF3958 0.18 -0.6 326,501 - GFF3958 0.18 +0.0 326,555 - GFF3958 0.21 -1.0 327,113 - GFF3958 0.51 +0.5 327,113 - GFF3958 0.51 +0.3 327,115 + GFF3958 0.51 +0.2 327,115 + GFF3958 0.51 -0.5 327,116 - GFF3958 0.51 -0.2 327,116 - GFF3958 0.51 +0.1 327,374 - GFF3958 0.64 -0.1 327,374 - GFF3958 0.64 +0.5 327,643 + GFF3958 0.78 +0.2 327,644 - GFF3958 0.78 +2.0 327,787 + GFF3958 0.86 +0.3 327,788 - GFF3958 0.86 -0.4 327,788 - GFF3958 0.86 +0.1 327,788 - GFF3958 0.86 +0.1 327,817 + GFF3958 0.88 +0.4 327,817 + GFF3958 0.88 -0.6 327,817 + GFF3958 0.88 -0.9 327,817 + GFF3958 0.88 -0.1 327,817 + GFF3958 0.88 +0.2 327,817 + GFF3958 0.88 -0.7 327,817 + GFF3958 0.88 +0.7 327,818 - GFF3958 0.88 +0.6 327,818 - GFF3958 0.88 +0.3 327,818 - GFF3958 0.88 +0.3 327,818 - GFF3958 0.88 -0.1 327,818 - GFF3958 0.88 +1.8 327,818 - GFF3958 0.88 +1.1 327,823 + GFF3958 0.88 -0.0 327,829 + GFF3958 0.88 -0.9 327,830 - GFF3958 0.88 -0.5 327,862 + GFF3958 0.90 +1.1 327,863 - +1.4 327,863 - -0.4 327,872 - +0.8 327,872 - +0.1 327,934 - +0.5 327,934 - +0.4 327,934 - -0.3 327,934 - -0.2 328,030 + -0.7 328,111 + +0.2
Or see this region's nucleotide sequence