Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3929 and GFF3930 are separated by 192 nucleotides GFF3930 and GFF3931 overlap by 13 nucleotides GFF3931 and GFF3932 are separated by 81 nucleotides
GFF3929 - Inner membrane protein YbhL, at 297,239 to 298,027
GFF3929
GFF3930 - hypothetical protein, at 298,220 to 299,134
GFF3930
GFF3931 - S-adenosylmethionine/S-adenosylhomocysteine transporter, at 299,122 to 300,048
GFF3931
GFF3932 - HTH-type transcriptional regulator HdfR, at 300,130 to 301,002
GFF3932
Position (kb) 298
299
300 Strain fitness (log2 ratio) -1
0
1 at 297.366 kb on + strand, within GFF3929 at 297.367 kb on - strand, within GFF3929 at 297.533 kb on + strand, within GFF3929 at 297.559 kb on - strand, within GFF3929 at 297.559 kb on - strand, within GFF3929 at 297.624 kb on + strand, within GFF3929 at 297.625 kb on - strand, within GFF3929 at 297.870 kb on + strand, within GFF3929 at 297.870 kb on + strand, within GFF3929 at 297.870 kb on + strand, within GFF3929 at 297.870 kb on + strand, within GFF3929 at 297.918 kb on + strand, within GFF3929 at 297.924 kb on + strand, within GFF3929 at 297.924 kb on + strand, within GFF3929 at 297.939 kb on + strand, within GFF3929 at 298.194 kb on + strand at 298.195 kb on - strand at 298.485 kb on - strand, within GFF3930 at 298.485 kb on - strand, within GFF3930 at 298.485 kb on - strand, within GFF3930 at 298.493 kb on + strand, within GFF3930 at 298.493 kb on + strand, within GFF3930 at 298.494 kb on - strand, within GFF3930 at 298.509 kb on - strand, within GFF3930 at 298.589 kb on + strand, within GFF3930 at 298.589 kb on + strand, within GFF3930 at 298.589 kb on + strand, within GFF3930 at 298.590 kb on - strand, within GFF3930 at 298.590 kb on - strand, within GFF3930 at 298.590 kb on - strand, within GFF3930 at 298.590 kb on - strand, within GFF3930 at 298.623 kb on - strand, within GFF3930 at 298.638 kb on - strand, within GFF3930 at 298.755 kb on - strand, within GFF3930 at 298.787 kb on + strand, within GFF3930 at 298.788 kb on - strand, within GFF3930 at 298.976 kb on + strand, within GFF3930 at 298.976 kb on + strand, within GFF3930 at 298.997 kb on + strand, within GFF3930 at 299.001 kb on - strand, within GFF3930 at 299.001 kb on - strand, within GFF3930 at 299.001 kb on - strand, within GFF3930 at 299.024 kb on + strand, within GFF3930 at 299.025 kb on - strand, within GFF3930 at 299.025 kb on - strand, within GFF3930 at 299.120 kb on + strand at 299.525 kb on - strand, within GFF3931 at 299.543 kb on + strand, within GFF3931 at 299.543 kb on + strand, within GFF3931 at 299.750 kb on + strand, within GFF3931 at 299.750 kb on + strand, within GFF3931 at 299.750 kb on + strand, within GFF3931 at 299.751 kb on - strand, within GFF3931 at 299.766 kb on - strand, within GFF3931
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 297,366 + GFF3929 0.16 -0.1 297,367 - GFF3929 0.16 +0.8 297,533 + GFF3929 0.37 +0.1 297,559 - GFF3929 0.41 +0.6 297,559 - GFF3929 0.41 -1.3 297,624 + GFF3929 0.49 +0.1 297,625 - GFF3929 0.49 +0.7 297,870 + GFF3929 0.80 -0.5 297,870 + GFF3929 0.80 -0.3 297,870 + GFF3929 0.80 +0.1 297,870 + GFF3929 0.80 -0.2 297,918 + GFF3929 0.86 -1.0 297,924 + GFF3929 0.87 -0.4 297,924 + GFF3929 0.87 +0.4 297,939 + GFF3929 0.89 +0.0 298,194 + -0.5 298,195 - +0.7 298,485 - GFF3930 0.29 -0.1 298,485 - GFF3930 0.29 +0.4 298,485 - GFF3930 0.29 +0.5 298,493 + GFF3930 0.30 -1.6 298,493 + GFF3930 0.30 +0.5 298,494 - GFF3930 0.30 -0.6 298,509 - GFF3930 0.32 +0.3 298,589 + GFF3930 0.40 +0.1 298,589 + GFF3930 0.40 +0.1 298,589 + GFF3930 0.40 -1.7 298,590 - GFF3930 0.40 +0.2 298,590 - GFF3930 0.40 +0.8 298,590 - GFF3930 0.40 -0.1 298,590 - GFF3930 0.40 +0.1 298,623 - GFF3930 0.44 -1.1 298,638 - GFF3930 0.46 +0.3 298,755 - GFF3930 0.58 +0.1 298,787 + GFF3930 0.62 +0.9 298,788 - GFF3930 0.62 +0.4 298,976 + GFF3930 0.83 +1.0 298,976 + GFF3930 0.83 +0.7 298,997 + GFF3930 0.85 +0.7 299,001 - GFF3930 0.85 -0.9 299,001 - GFF3930 0.85 -0.5 299,001 - GFF3930 0.85 -0.5 299,024 + GFF3930 0.88 +1.5 299,025 - GFF3930 0.88 +0.1 299,025 - GFF3930 0.88 -0.1 299,120 + +0.1 299,525 - GFF3931 0.43 +1.0 299,543 + GFF3931 0.45 -0.1 299,543 + GFF3931 0.45 -0.1 299,750 + GFF3931 0.68 +0.6 299,750 + GFF3931 0.68 +0.0 299,750 + GFF3931 0.68 -0.3 299,751 - GFF3931 0.68 +0.3 299,766 - GFF3931 0.69 +0.1
Or see this region's nucleotide sequence