Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3897 and GFF3898 are separated by 4 nucleotides GFF3898 and GFF3899 are separated by 84 nucleotides GFF3899 and GFF3900 are separated by 129 nucleotides
GFF3897 - hypothetical protein, at 262,377 to 263,624
GFF3897
GFF3898 - hypothetical protein, at 263,629 to 264,381
GFF3898
GFF3899 - Succinyl-CoA:coenzyme A transferase, at 264,466 to 265,992
GFF3899
GFF3900 - Phosphomannomutase/phosphoglucomutase, at 266,122 to 267,621
GFF3900
Position (kb) 264
265
266 Strain fitness (log2 ratio) -2
-1
0
1 at 263.560 kb on - strand at 263.560 kb on - strand at 264.179 kb on + strand, within GFF3898 at 264.179 kb on + strand, within GFF3898 at 264.429 kb on - strand at 265.015 kb on + strand, within GFF3899 at 265.015 kb on + strand, within GFF3899 at 265.015 kb on + strand, within GFF3899 at 265.015 kb on + strand, within GFF3899 at 265.015 kb on + strand, within GFF3899 at 265.015 kb on + strand, within GFF3899 at 265.016 kb on - strand, within GFF3899 at 265.016 kb on - strand, within GFF3899 at 265.016 kb on - strand, within GFF3899 at 265.016 kb on - strand, within GFF3899 at 265.337 kb on - strand, within GFF3899 at 265.433 kb on - strand, within GFF3899 at 265.462 kb on + strand, within GFF3899 at 265.567 kb on + strand, within GFF3899 at 265.568 kb on - strand, within GFF3899 at 265.651 kb on + strand, within GFF3899 at 265.651 kb on + strand, within GFF3899 at 265.652 kb on - strand, within GFF3899 at 265.652 kb on - strand, within GFF3899 at 265.652 kb on - strand, within GFF3899 at 266.035 kb on - strand at 266.057 kb on - strand at 266.057 kb on - strand at 266.075 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 263,560 - -0.6 263,560 - -2.1 264,179 + GFF3898 0.73 -0.6 264,179 + GFF3898 0.73 -0.1 264,429 - -0.3 265,015 + GFF3899 0.36 +1.5 265,015 + GFF3899 0.36 -1.4 265,015 + GFF3899 0.36 +1.5 265,015 + GFF3899 0.36 +0.1 265,015 + GFF3899 0.36 +0.0 265,015 + GFF3899 0.36 +0.2 265,016 - GFF3899 0.36 +0.5 265,016 - GFF3899 0.36 -0.3 265,016 - GFF3899 0.36 +0.4 265,016 - GFF3899 0.36 +0.2 265,337 - GFF3899 0.57 +0.5 265,433 - GFF3899 0.63 +0.5 265,462 + GFF3899 0.65 +0.1 265,567 + GFF3899 0.72 -0.2 265,568 - GFF3899 0.72 +1.3 265,651 + GFF3899 0.78 -0.1 265,651 + GFF3899 0.78 +0.7 265,652 - GFF3899 0.78 -0.4 265,652 - GFF3899 0.78 +0.2 265,652 - GFF3899 0.78 +0.1 266,035 - -0.9 266,057 - -0.9 266,057 - +0.9 266,075 + +0.3
Or see this region's nucleotide sequence