Strain Fitness in Xanthobacter sp. DMC5 around GFF3838

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3837 and GFF3838 are separated by 125 nucleotidesGFF3838 and GFF3839 are separated by 98 nucleotides GFF3837 - Diaminopimelate decarboxylase, at 198,250 to 199,518 GFF3837 GFF3838 - hypothetical protein, at 199,644 to 199,964 GFF3838 GFF3839 - Argininosuccinate lyase, at 200,063 to 201,460 GFF3839 Position (kb) 199 200Strain fitness (log2 ratio) -1 0 1at 199.802 kb on - strand, within GFF3838at 199.802 kb on - strand, within GFF3838at 199.802 kb on - strand, within GFF3838at 200.002 kb on - strandat 200.004 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
199,802 - GFF3838 0.49 +0.7
199,802 - GFF3838 0.49 -0.0
199,802 - GFF3838 0.49 +0.2
200,002 - -0.5
200,004 - -0.5

Or see this region's nucleotide sequence