Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3828 and GFF3829 are separated by 665 nucleotides GFF3829 and GFF3830 are separated by 6 nucleotides
GFF3828 - DNA ligase, at 185,339 to 187,477
GFF3828
GFF3829 - hypothetical protein, at 188,143 to 189,651
GFF3829
GFF3830 - DNA gyrase subunit B, at 189,658 to 192,084
GFF3830
Position (kb) 188
189
190 Strain fitness (log2 ratio) -1
0
1 at 187.475 kb on + strand at 188.000 kb on - strand at 188.041 kb on - strand at 188.292 kb on + strand at 188.375 kb on + strand, within GFF3829 at 188.380 kb on + strand, within GFF3829 at 188.509 kb on - strand, within GFF3829 at 188.869 kb on + strand, within GFF3829 at 188.869 kb on + strand, within GFF3829 at 188.964 kb on - strand, within GFF3829 at 189.007 kb on + strand, within GFF3829 at 189.040 kb on + strand, within GFF3829 at 189.041 kb on - strand, within GFF3829 at 189.182 kb on + strand, within GFF3829 at 189.182 kb on + strand, within GFF3829 at 189.183 kb on - strand, within GFF3829 at 189.183 kb on - strand, within GFF3829 at 189.224 kb on + strand, within GFF3829 at 189.225 kb on - strand, within GFF3829 at 189.225 kb on - strand, within GFF3829 at 189.327 kb on - strand, within GFF3829 at 189.327 kb on - strand, within GFF3829 at 189.347 kb on + strand, within GFF3829 at 189.348 kb on - strand, within GFF3829 at 189.351 kb on - strand, within GFF3829 at 189.351 kb on - strand, within GFF3829 at 189.351 kb on - strand, within GFF3829 at 189.351 kb on - strand, within GFF3829 at 189.408 kb on + strand, within GFF3829 at 189.413 kb on - strand, within GFF3829 at 189.470 kb on + strand, within GFF3829 at 189.470 kb on + strand, within GFF3829 at 189.503 kb on + strand at 189.507 kb on + strand at 189.549 kb on - strand at 189.549 kb on - strand at 189.559 kb on + strand at 189.559 kb on + strand at 189.560 kb on - strand at 189.649 kb on + strand at 189.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 187,475 + -0.3 188,000 - -0.1 188,041 - +0.5 188,292 + +0.1 188,375 + GFF3829 0.15 +0.1 188,380 + GFF3829 0.16 -0.1 188,509 - GFF3829 0.24 +0.2 188,869 + GFF3829 0.48 -0.2 188,869 + GFF3829 0.48 -0.8 188,964 - GFF3829 0.54 -0.3 189,007 + GFF3829 0.57 -0.8 189,040 + GFF3829 0.59 -0.5 189,041 - GFF3829 0.60 +0.2 189,182 + GFF3829 0.69 +1.2 189,182 + GFF3829 0.69 +0.7 189,183 - GFF3829 0.69 +0.2 189,183 - GFF3829 0.69 -0.2 189,224 + GFF3829 0.72 +0.3 189,225 - GFF3829 0.72 +0.5 189,225 - GFF3829 0.72 -0.3 189,327 - GFF3829 0.78 +0.8 189,327 - GFF3829 0.78 -0.9 189,347 + GFF3829 0.80 -1.6 189,348 - GFF3829 0.80 -0.7 189,351 - GFF3829 0.80 -1.5 189,351 - GFF3829 0.80 +0.6 189,351 - GFF3829 0.80 +0.7 189,351 - GFF3829 0.80 -0.8 189,408 + GFF3829 0.84 +0.1 189,413 - GFF3829 0.84 -0.0 189,470 + GFF3829 0.88 +0.1 189,470 + GFF3829 0.88 +1.0 189,503 + -0.1 189,507 + -0.4 189,549 - +0.2 189,549 - -0.8 189,559 + -0.4 189,559 + -0.8 189,560 - +1.0 189,649 + -0.9 189,650 - +0.2
Or see this region's nucleotide sequence