Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3817 and GFF3818 are separated by 31 nucleotides GFF3818 and GFF3819 are separated by 35 nucleotides GFF3819 and GFF3820 are separated by 130 nucleotides GFF3820 and GFF3821 are separated by 111 nucleotides GFF3821 and GFF3822 overlap by 1 nucleotides
GFF3817 - Hydroxyacylglutathione hydrolase GloC, at 174,186 to 174,824
GFF3817
GFF3818 - putative N-octanoylanthranilate hydrolase AqdA1, at 174,856 to 175,686
GFF3818
GFF3819 - hypothetical protein, at 175,722 to 177,065
GFF3819
GFF3820 - hypothetical protein, at 177,196 to 177,453
GFF3820
GFF3821 - hypothetical protein, at 177,565 to 177,876
GFF3821
GFF3822 - hypothetical protein, at 177,876 to 178,376
GFF3822
Position (kb) 175
176
177
178 Strain fitness (log2 ratio) -2
-1
0
1 at 174.826 kb on + strand at 175.065 kb on + strand, within GFF3818 at 175.065 kb on + strand, within GFF3818 at 175.066 kb on - strand, within GFF3818 at 175.172 kb on + strand, within GFF3818 at 175.172 kb on + strand, within GFF3818 at 175.172 kb on + strand, within GFF3818 at 175.173 kb on - strand, within GFF3818 at 175.173 kb on - strand, within GFF3818 at 175.319 kb on + strand, within GFF3818 at 175.559 kb on + strand, within GFF3818 at 175.668 kb on - strand at 175.716 kb on + strand at 175.900 kb on + strand, within GFF3819 at 175.900 kb on + strand, within GFF3819 at 175.900 kb on + strand, within GFF3819 at 175.901 kb on - strand, within GFF3819 at 175.901 kb on - strand, within GFF3819 at 175.903 kb on + strand, within GFF3819 at 175.903 kb on + strand, within GFF3819 at 175.903 kb on + strand, within GFF3819 at 175.904 kb on - strand, within GFF3819 at 176.200 kb on + strand, within GFF3819 at 176.201 kb on - strand, within GFF3819 at 176.206 kb on + strand, within GFF3819 at 176.207 kb on - strand, within GFF3819 at 176.207 kb on - strand, within GFF3819 at 176.207 kb on - strand, within GFF3819 at 176.207 kb on - strand, within GFF3819 at 176.422 kb on + strand, within GFF3819 at 176.422 kb on + strand, within GFF3819 at 176.422 kb on + strand, within GFF3819 at 176.423 kb on - strand, within GFF3819 at 176.764 kb on + strand, within GFF3819 at 176.764 kb on + strand, within GFF3819 at 176.764 kb on + strand, within GFF3819 at 176.765 kb on - strand, within GFF3819 at 176.765 kb on - strand, within GFF3819 at 176.827 kb on + strand, within GFF3819 at 176.827 kb on + strand, within GFF3819 at 176.828 kb on - strand, within GFF3819 at 176.871 kb on + strand, within GFF3819 at 176.872 kb on - strand, within GFF3819 at 176.872 kb on - strand, within GFF3819 at 177.156 kb on + strand at 177.263 kb on + strand, within GFF3820 at 177.275 kb on + strand, within GFF3820 at 177.275 kb on + strand, within GFF3820 at 177.276 kb on - strand, within GFF3820 at 177.456 kb on - strand at 177.513 kb on + strand at 177.514 kb on - strand at 177.590 kb on + strand at 177.591 kb on - strand at 177.695 kb on + strand, within GFF3821 at 177.696 kb on - strand, within GFF3821 at 177.696 kb on - strand, within GFF3821
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 174,826 + +0.6 175,065 + GFF3818 0.25 -0.1 175,065 + GFF3818 0.25 +0.5 175,066 - GFF3818 0.25 +0.3 175,172 + GFF3818 0.38 -0.7 175,172 + GFF3818 0.38 +0.5 175,172 + GFF3818 0.38 +0.3 175,173 - GFF3818 0.38 -0.3 175,173 - GFF3818 0.38 -0.9 175,319 + GFF3818 0.56 -1.4 175,559 + GFF3818 0.85 +0.1 175,668 - +0.4 175,716 + -0.4 175,900 + GFF3819 0.13 -1.6 175,900 + GFF3819 0.13 -0.2 175,900 + GFF3819 0.13 -0.2 175,901 - GFF3819 0.13 -0.1 175,901 - GFF3819 0.13 -0.2 175,903 + GFF3819 0.13 +0.6 175,903 + GFF3819 0.13 -0.2 175,903 + GFF3819 0.13 -1.3 175,904 - GFF3819 0.14 -0.6 176,200 + GFF3819 0.36 -1.6 176,201 - GFF3819 0.36 -0.3 176,206 + GFF3819 0.36 -0.5 176,207 - GFF3819 0.36 -2.3 176,207 - GFF3819 0.36 +0.9 176,207 - GFF3819 0.36 -0.8 176,207 - GFF3819 0.36 +0.5 176,422 + GFF3819 0.52 -0.4 176,422 + GFF3819 0.52 -0.4 176,422 + GFF3819 0.52 -0.2 176,423 - GFF3819 0.52 +0.0 176,764 + GFF3819 0.78 +0.3 176,764 + GFF3819 0.78 +0.7 176,764 + GFF3819 0.78 -0.8 176,765 - GFF3819 0.78 -0.5 176,765 - GFF3819 0.78 +0.7 176,827 + GFF3819 0.82 +0.4 176,827 + GFF3819 0.82 +0.5 176,828 - GFF3819 0.82 -0.5 176,871 + GFF3819 0.85 -0.1 176,872 - GFF3819 0.86 -0.1 176,872 - GFF3819 0.86 -0.4 177,156 + -0.3 177,263 + GFF3820 0.26 -0.5 177,275 + GFF3820 0.31 +0.3 177,275 + GFF3820 0.31 +0.4 177,276 - GFF3820 0.31 +0.3 177,456 - -0.1 177,513 + -0.1 177,514 - +0.1 177,590 + -0.5 177,591 - +0.5 177,695 + GFF3821 0.42 -0.3 177,696 - GFF3821 0.42 +0.1 177,696 - GFF3821 0.42 -0.1
Or see this region's nucleotide sequence