Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3803 and GFF3804 overlap by 4 nucleotides GFF3804 and GFF3805 overlap by 41 nucleotides GFF3805 and GFF3806 are separated by 1 nucleotides
GFF3803 - hypothetical protein, at 161,170 to 162,174
GFF3803
GFF3804 - hypothetical protein, at 162,171 to 162,932
GFF3804
GFF3805 - Aliphatic sulfonates import ATP-binding protein SsuB, at 162,892 to 163,641
GFF3805
GFF3806 - hypothetical protein, at 163,643 to 164,617
GFF3806
Position (kb) 162
163 Strain fitness (log2 ratio) -2
-1
0
1 at 161.479 kb on + strand, within GFF3803 at 161.479 kb on + strand, within GFF3803 at 161.479 kb on + strand, within GFF3803 at 161.480 kb on - strand, within GFF3803 at 161.839 kb on + strand, within GFF3803 at 161.839 kb on + strand, within GFF3803 at 161.839 kb on + strand, within GFF3803 at 161.840 kb on - strand, within GFF3803 at 161.840 kb on - strand, within GFF3803 at 161.840 kb on - strand, within GFF3803 at 162.079 kb on + strand at 162.079 kb on + strand at 162.079 kb on + strand at 162.079 kb on + strand at 162.080 kb on - strand at 162.080 kb on - strand at 162.148 kb on + strand at 162.148 kb on + strand at 162.149 kb on - strand at 162.504 kb on + strand, within GFF3804 at 162.504 kb on + strand, within GFF3804 at 162.504 kb on + strand, within GFF3804 at 162.504 kb on + strand, within GFF3804 at 162.505 kb on - strand, within GFF3804 at 162.505 kb on - strand, within GFF3804 at 162.784 kb on - strand, within GFF3804 at 162.835 kb on - strand, within GFF3804 at 162.891 kb on + strand at 162.891 kb on + strand at 162.891 kb on + strand at 162.892 kb on - strand at 162.892 kb on - strand at 162.955 kb on + strand at 162.955 kb on + strand at 163.418 kb on - strand, within GFF3805 at 163.814 kb on + strand, within GFF3806 at 163.814 kb on + strand, within GFF3806 at 163.815 kb on - strand, within GFF3806 at 163.815 kb on - strand, within GFF3806
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 161,479 + GFF3803 0.31 -0.1 161,479 + GFF3803 0.31 -1.8 161,479 + GFF3803 0.31 +0.6 161,480 - GFF3803 0.31 +0.1 161,839 + GFF3803 0.67 -0.3 161,839 + GFF3803 0.67 -0.4 161,839 + GFF3803 0.67 +1.1 161,840 - GFF3803 0.67 -0.0 161,840 - GFF3803 0.67 -0.1 161,840 - GFF3803 0.67 -0.3 162,079 + +0.2 162,079 + +0.4 162,079 + -0.8 162,079 + +0.5 162,080 - +0.4 162,080 - -0.5 162,148 + +0.4 162,148 + +0.2 162,149 - -0.6 162,504 + GFF3804 0.44 -0.3 162,504 + GFF3804 0.44 -0.1 162,504 + GFF3804 0.44 -0.1 162,504 + GFF3804 0.44 +0.2 162,505 - GFF3804 0.44 -0.5 162,505 - GFF3804 0.44 +0.1 162,784 - GFF3804 0.80 -0.3 162,835 - GFF3804 0.87 -0.0 162,891 + +0.2 162,891 + -0.5 162,891 + -0.5 162,892 - +0.3 162,892 - +1.3 162,955 + -0.5 162,955 + -0.9 163,418 - GFF3805 0.70 +0.5 163,814 + GFF3806 0.18 +0.4 163,814 + GFF3806 0.18 -0.6 163,815 - GFF3806 0.18 +0.2 163,815 - GFF3806 0.18 -0.2
Or see this region's nucleotide sequence