Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3778 and GFF3779 are separated by 202 nucleotides GFF3779 and GFF3780 are separated by 97 nucleotides GFF3780 and GFF3781 are separated by 139 nucleotides
GFF3778 - putative signaling protein, at 126,213 to 127,544
GFF3778
GFF3779 - Peptidyl-lysine N-acetyltransferase PatZ, at 127,747 to 130,455
GFF3779
GFF3780 - Transcriptional regulatory protein FixJ, at 130,553 to 130,942
GFF3780
GFF3781 - Transcriptional regulatory protein FixJ, at 131,082 to 131,720
GFF3781
Position (kb) 127
128
129
130
131 Strain fitness (log2 ratio) -1
0
1 at 126.936 kb on + strand, within GFF3778 at 127.010 kb on - strand, within GFF3778 at 127.345 kb on + strand, within GFF3778 at 127.345 kb on + strand, within GFF3778 at 127.346 kb on - strand, within GFF3778 at 127.371 kb on - strand, within GFF3778 at 127.455 kb on + strand at 127.524 kb on + strand at 127.524 kb on + strand at 127.732 kb on + strand at 127.907 kb on - strand at 128.102 kb on + strand, within GFF3779 at 128.948 kb on + strand, within GFF3779 at 128.948 kb on + strand, within GFF3779 at 129.149 kb on + strand, within GFF3779 at 129.366 kb on - strand, within GFF3779 at 129.810 kb on - strand, within GFF3779 at 129.810 kb on - strand, within GFF3779 at 129.810 kb on - strand, within GFF3779 at 129.848 kb on + strand, within GFF3779 at 129.848 kb on + strand, within GFF3779 at 129.848 kb on + strand, within GFF3779 at 129.848 kb on + strand, within GFF3779 at 130.278 kb on - strand at 130.827 kb on + strand, within GFF3780 at 130.827 kb on + strand, within GFF3780 at 130.827 kb on + strand, within GFF3780 at 130.828 kb on - strand, within GFF3780 at 130.828 kb on - strand, within GFF3780 at 130.828 kb on - strand, within GFF3780 at 130.828 kb on - strand, within GFF3780 at 130.904 kb on - strand at 131.000 kb on - strand at 131.030 kb on + strand at 131.031 kb on - strand at 131.074 kb on + strand at 131.176 kb on + strand, within GFF3781 at 131.212 kb on + strand, within GFF3781 at 131.213 kb on - strand, within GFF3781
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 126,936 + GFF3778 0.54 -0.1 127,010 - GFF3778 0.60 -0.1 127,345 + GFF3778 0.85 -0.3 127,345 + GFF3778 0.85 -0.3 127,346 - GFF3778 0.85 +1.1 127,371 - GFF3778 0.87 -0.1 127,455 + +0.7 127,524 + -0.8 127,524 + -0.5 127,732 + +0.8 127,907 - +0.9 128,102 + GFF3779 0.13 +0.4 128,948 + GFF3779 0.44 -0.4 128,948 + GFF3779 0.44 +0.4 129,149 + GFF3779 0.52 -0.1 129,366 - GFF3779 0.60 -0.2 129,810 - GFF3779 0.76 -0.1 129,810 - GFF3779 0.76 -0.1 129,810 - GFF3779 0.76 -0.3 129,848 + GFF3779 0.78 +0.1 129,848 + GFF3779 0.78 -0.4 129,848 + GFF3779 0.78 -1.1 129,848 + GFF3779 0.78 -0.4 130,278 - -0.2 130,827 + GFF3780 0.70 -0.3 130,827 + GFF3780 0.70 -0.3 130,827 + GFF3780 0.70 -0.6 130,828 - GFF3780 0.71 +0.5 130,828 - GFF3780 0.71 -0.6 130,828 - GFF3780 0.71 +0.5 130,828 - GFF3780 0.71 +0.5 130,904 - +0.8 131,000 - -0.1 131,030 + -0.8 131,031 - -0.4 131,074 + -0.1 131,176 + GFF3781 0.15 -0.9 131,212 + GFF3781 0.20 +0.3 131,213 - GFF3781 0.21 -0.5
Or see this region's nucleotide sequence