Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3677 and GFF3678 are separated by 137 nucleotides GFF3678 and GFF3679 are separated by 98 nucleotides
GFF3677 - C4-dicarboxylate transport protein, at 19,356 to 20,717
GFF3677
GFF3678 - Chromate transport protein, at 20,855 to 22,099
GFF3678
GFF3679 - hypothetical protein, at 22,198 to 23,514
GFF3679
Position (kb) 20
21
22
23 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 20.025 kb on + strand, within GFF3677 at 20.025 kb on + strand, within GFF3677 at 20.025 kb on + strand, within GFF3677 at 20.074 kb on - strand, within GFF3677 at 20.074 kb on - strand, within GFF3677 at 20.125 kb on - strand, within GFF3677 at 20.157 kb on + strand, within GFF3677 at 20.157 kb on + strand, within GFF3677 at 20.157 kb on + strand, within GFF3677 at 20.316 kb on + strand, within GFF3677 at 20.316 kb on + strand, within GFF3677 at 20.316 kb on + strand, within GFF3677 at 20.316 kb on + strand, within GFF3677 at 20.316 kb on + strand, within GFF3677 at 20.653 kb on - strand at 21.026 kb on + strand, within GFF3678 at 21.168 kb on + strand, within GFF3678 at 21.168 kb on + strand, within GFF3678 at 21.169 kb on - strand, within GFF3678 at 21.169 kb on - strand, within GFF3678 at 21.197 kb on + strand, within GFF3678 at 21.197 kb on + strand, within GFF3678 at 21.197 kb on + strand, within GFF3678 at 21.198 kb on - strand, within GFF3678 at 21.522 kb on + strand, within GFF3678 at 21.569 kb on + strand, within GFF3678 at 21.569 kb on + strand, within GFF3678 at 21.569 kb on + strand, within GFF3678 at 21.571 kb on + strand, within GFF3678 at 21.572 kb on - strand, within GFF3678 at 21.572 kb on - strand, within GFF3678 at 21.593 kb on + strand, within GFF3678 at 21.593 kb on + strand, within GFF3678 at 21.594 kb on - strand, within GFF3678 at 21.594 kb on - strand, within GFF3678 at 21.594 kb on - strand, within GFF3678 at 21.594 kb on - strand, within GFF3678 at 21.837 kb on + strand, within GFF3678 at 21.838 kb on - strand, within GFF3678 at 21.947 kb on + strand, within GFF3678 at 21.947 kb on + strand, within GFF3678 at 21.948 kb on - strand, within GFF3678
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 20,025 + GFF3677 0.49 +2.9 20,025 + GFF3677 0.49 +3.0 20,025 + GFF3677 0.49 +2.6 20,074 - GFF3677 0.53 +2.3 20,074 - GFF3677 0.53 +2.6 20,125 - GFF3677 0.56 +3.4 20,157 + GFF3677 0.59 +3.4 20,157 + GFF3677 0.59 +2.7 20,157 + GFF3677 0.59 +3.4 20,316 + GFF3677 0.70 +3.7 20,316 + GFF3677 0.70 +3.8 20,316 + GFF3677 0.70 +3.0 20,316 + GFF3677 0.70 +3.0 20,316 + GFF3677 0.70 +2.7 20,653 - +3.1 21,026 + GFF3678 0.14 -0.1 21,168 + GFF3678 0.25 -0.1 21,168 + GFF3678 0.25 -0.8 21,169 - GFF3678 0.25 +0.5 21,169 - GFF3678 0.25 +0.3 21,197 + GFF3678 0.27 +0.7 21,197 + GFF3678 0.27 +0.1 21,197 + GFF3678 0.27 +0.4 21,198 - GFF3678 0.28 +0.7 21,522 + GFF3678 0.54 +0.5 21,569 + GFF3678 0.57 -0.4 21,569 + GFF3678 0.57 +0.3 21,569 + GFF3678 0.57 -1.1 21,571 + GFF3678 0.58 +0.4 21,572 - GFF3678 0.58 +0.2 21,572 - GFF3678 0.58 +0.0 21,593 + GFF3678 0.59 +0.8 21,593 + GFF3678 0.59 +1.2 21,594 - GFF3678 0.59 +0.4 21,594 - GFF3678 0.59 -0.1 21,594 - GFF3678 0.59 +0.1 21,594 - GFF3678 0.59 +0.3 21,837 + GFF3678 0.79 -0.3 21,838 - GFF3678 0.79 -0.3 21,947 + GFF3678 0.88 -0.1 21,947 + GFF3678 0.88 -1.0 21,948 - GFF3678 0.88 +0.8
Or see this region's nucleotide sequence