Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3630 and GFF3631 overlap by 4 nucleotides GFF3631 and GFF3632 overlap by 4 nucleotides GFF3632 and GFF3633 overlap by 4 nucleotides GFF3633 and GFF3634 are separated by 9 nucleotides GFF3634 and GFF3635 overlap by 4 nucleotides
GFF3630 - hypothetical protein, at 494,402 to 495,454
GFF3630
GFF3631 - hypothetical protein, at 495,451 to 496,140
GFF3631
GFF3632 - hypothetical protein, at 496,137 to 497,417
GFF3632
GFF3633 - hypothetical protein, at 497,414 to 497,674
GFF3633
GFF3634 - hypothetical protein, at 497,684 to 498,418
GFF3634
GFF3635 - Type IV secretion system protein virB4, at 498,415 to 500,844
GFF3635
Position (kb) 496
497
498 Strain fitness (log2 ratio) -1
0
1
2 at 495.185 kb on + strand, within GFF3630 at 495.185 kb on + strand, within GFF3630 at 495.306 kb on + strand, within GFF3630 at 495.491 kb on + strand at 495.491 kb on + strand at 495.750 kb on + strand, within GFF3631 at 495.750 kb on + strand, within GFF3631 at 495.750 kb on + strand, within GFF3631 at 495.750 kb on + strand, within GFF3631 at 495.752 kb on + strand, within GFF3631 at 495.752 kb on + strand, within GFF3631 at 495.752 kb on + strand, within GFF3631 at 495.753 kb on - strand, within GFF3631 at 495.753 kb on - strand, within GFF3631 at 495.758 kb on + strand, within GFF3631 at 495.759 kb on - strand, within GFF3631 at 495.759 kb on - strand, within GFF3631 at 495.759 kb on - strand, within GFF3631 at 495.759 kb on - strand, within GFF3631 at 495.759 kb on - strand, within GFF3631 at 495.866 kb on + strand, within GFF3631 at 495.866 kb on + strand, within GFF3631 at 496.079 kb on + strand at 496.079 kb on + strand at 496.079 kb on + strand at 496.080 kb on - strand at 496.080 kb on - strand at 496.080 kb on - strand at 496.109 kb on + strand at 496.109 kb on + strand at 496.278 kb on + strand, within GFF3632 at 496.735 kb on + strand, within GFF3632 at 496.735 kb on + strand, within GFF3632 at 496.735 kb on + strand, within GFF3632 at 496.735 kb on + strand, within GFF3632 at 496.914 kb on + strand, within GFF3632 at 496.914 kb on + strand, within GFF3632 at 496.914 kb on + strand, within GFF3632 at 496.914 kb on + strand, within GFF3632 at 496.915 kb on - strand, within GFF3632 at 496.915 kb on - strand, within GFF3632 at 496.915 kb on - strand, within GFF3632 at 497.440 kb on + strand, within GFF3633 at 497.440 kb on + strand, within GFF3633 at 497.441 kb on - strand, within GFF3633 at 497.444 kb on + strand, within GFF3633 at 497.444 kb on + strand, within GFF3633 at 497.444 kb on + strand, within GFF3633 at 497.444 kb on + strand, within GFF3633 at 497.444 kb on + strand, within GFF3633 at 497.445 kb on - strand, within GFF3633 at 497.445 kb on - strand, within GFF3633 at 497.445 kb on - strand, within GFF3633 at 497.445 kb on - strand, within GFF3633 at 497.721 kb on + strand at 497.721 kb on + strand at 497.721 kb on + strand at 498.081 kb on + strand, within GFF3634 at 498.081 kb on + strand, within GFF3634 at 498.120 kb on + strand, within GFF3634 at 498.120 kb on + strand, within GFF3634 at 498.120 kb on + strand, within GFF3634 at 498.121 kb on - strand, within GFF3634 at 498.195 kb on + strand, within GFF3634 at 498.196 kb on - strand, within GFF3634 at 498.196 kb on - strand, within GFF3634 at 498.315 kb on + strand, within GFF3634 at 498.315 kb on + strand, within GFF3634 at 498.315 kb on + strand, within GFF3634 at 498.316 kb on - strand, within GFF3634 at 498.316 kb on - strand, within GFF3634 at 498.316 kb on - strand, within GFF3634 at 498.330 kb on + strand, within GFF3634 at 498.330 kb on + strand, within GFF3634 at 498.339 kb on + strand, within GFF3634 at 498.339 kb on + strand, within GFF3634 at 498.339 kb on + strand, within GFF3634
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 495,185 + GFF3630 0.74 -0.2 495,185 + GFF3630 0.74 +0.9 495,306 + GFF3630 0.86 -0.3 495,491 + -0.2 495,491 + +0.2 495,750 + GFF3631 0.43 +0.5 495,750 + GFF3631 0.43 +1.0 495,750 + GFF3631 0.43 -0.5 495,750 + GFF3631 0.43 +0.5 495,752 + GFF3631 0.44 +0.3 495,752 + GFF3631 0.44 +0.3 495,752 + GFF3631 0.44 +0.0 495,753 - GFF3631 0.44 +0.2 495,753 - GFF3631 0.44 +0.3 495,758 + GFF3631 0.44 +0.1 495,759 - GFF3631 0.45 +0.2 495,759 - GFF3631 0.45 +0.0 495,759 - GFF3631 0.45 -0.4 495,759 - GFF3631 0.45 +0.5 495,759 - GFF3631 0.45 +1.5 495,866 + GFF3631 0.60 -0.6 495,866 + GFF3631 0.60 -0.1 496,079 + -0.7 496,079 + -0.3 496,079 + -0.2 496,080 - +0.2 496,080 - -0.1 496,080 - +0.8 496,109 + +0.6 496,109 + -1.2 496,278 + GFF3632 0.11 +1.5 496,735 + GFF3632 0.47 +0.4 496,735 + GFF3632 0.47 +0.8 496,735 + GFF3632 0.47 -0.7 496,735 + GFF3632 0.47 -0.1 496,914 + GFF3632 0.61 -0.2 496,914 + GFF3632 0.61 +0.8 496,914 + GFF3632 0.61 -1.4 496,914 + GFF3632 0.61 +0.8 496,915 - GFF3632 0.61 +0.4 496,915 - GFF3632 0.61 +1.9 496,915 - GFF3632 0.61 +0.2 497,440 + GFF3633 0.10 -0.4 497,440 + GFF3633 0.10 +0.7 497,441 - GFF3633 0.10 -0.1 497,444 + GFF3633 0.11 +0.7 497,444 + GFF3633 0.11 -0.7 497,444 + GFF3633 0.11 +0.1 497,444 + GFF3633 0.11 -0.1 497,444 + GFF3633 0.11 -0.4 497,445 - GFF3633 0.12 +0.2 497,445 - GFF3633 0.12 -0.3 497,445 - GFF3633 0.12 -0.2 497,445 - GFF3633 0.12 -0.2 497,721 + -0.9 497,721 + -0.9 497,721 + -0.7 498,081 + GFF3634 0.54 +0.1 498,081 + GFF3634 0.54 -0.4 498,120 + GFF3634 0.59 +1.2 498,120 + GFF3634 0.59 -0.2 498,120 + GFF3634 0.59 -0.6 498,121 - GFF3634 0.59 -0.2 498,195 + GFF3634 0.70 -0.2 498,196 - GFF3634 0.70 -0.1 498,196 - GFF3634 0.70 -0.5 498,315 + GFF3634 0.86 +0.1 498,315 + GFF3634 0.86 +0.4 498,315 + GFF3634 0.86 -0.6 498,316 - GFF3634 0.86 -0.5 498,316 - GFF3634 0.86 +0.4 498,316 - GFF3634 0.86 -0.3 498,330 + GFF3634 0.88 -0.1 498,330 + GFF3634 0.88 -0.2 498,339 + GFF3634 0.89 -1.3 498,339 + GFF3634 0.89 +0.4 498,339 + GFF3634 0.89 +0.2
Or see this region's nucleotide sequence