Strain Fitness in Xanthobacter sp. DMC5 around GFF3622

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3621 and GFF3622 are separated by 490 nucleotidesGFF3622 and GFF3623 are separated by 427 nucleotides GFF3621 - Tyrosine recombinase XerC, at 485,829 to 487,133 GFF3621 GFF3622 - hypothetical protein, at 487,624 to 488,907 GFF3622 GFF3623 - Fe(3+) dicitrate transport system permease protein FecD, at 489,335 to 490,330 GFF3623 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1at 486.633 kb on + strand, within GFF3621at 486.633 kb on + strand, within GFF3621at 486.633 kb on + strand, within GFF3621at 486.633 kb on + strand, within GFF3621at 486.633 kb on + strand, within GFF3621at 486.633 kb on + strand, within GFF3621at 486.634 kb on - strand, within GFF3621at 486.634 kb on - strand, within GFF3621at 486.733 kb on + strand, within GFF3621at 486.733 kb on + strand, within GFF3621at 486.733 kb on + strand, within GFF3621at 486.733 kb on + strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.734 kb on - strand, within GFF3621at 486.830 kb on + strand, within GFF3621at 486.831 kb on - strand, within GFF3621at 486.831 kb on - strand, within GFF3621at 486.831 kb on - strand, within GFF3621at 486.831 kb on - strand, within GFF3621at 486.994 kb on + strand, within GFF3621at 487.016 kb on + strandat 487.063 kb on + strandat 487.064 kb on - strandat 487.064 kb on - strandat 487.069 kb on + strandat 487.069 kb on + strandat 487.070 kb on - strandat 487.070 kb on - strandat 487.092 kb on + strandat 487.093 kb on - strandat 487.234 kb on - strandat 487.384 kb on + strandat 487.385 kb on - strandat 487.385 kb on - strandat 487.427 kb on + strandat 487.446 kb on + strandat 487.446 kb on + strandat 487.447 kb on - strandat 487.447 kb on - strandat 487.447 kb on - strandat 487.605 kb on + strandat 487.606 kb on - strandat 487.620 kb on + strandat 487.620 kb on + strandat 487.621 kb on - strandat 487.621 kb on - strandat 487.621 kb on - strandat 487.625 kb on + strandat 487.625 kb on + strandat 487.625 kb on + strandat 487.626 kb on - strandat 487.626 kb on - strandat 487.626 kb on - strandat 487.626 kb on - strandat 487.626 kb on - strandat 487.699 kb on + strandat 487.699 kb on + strandat 487.699 kb on + strandat 487.700 kb on - strandat 487.700 kb on - strandat 487.902 kb on + strand, within GFF3622at 487.902 kb on + strand, within GFF3622at 487.957 kb on + strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 487.958 kb on - strand, within GFF3622at 488.042 kb on + strand, within GFF3622at 488.043 kb on - strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.184 kb on + strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.185 kb on - strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.186 kb on + strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.187 kb on - strand, within GFF3622at 488.232 kb on + strand, within GFF3622at 488.232 kb on + strand, within GFF3622at 488.232 kb on + strand, within GFF3622at 488.232 kb on + strand, within GFF3622at 488.232 kb on + strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.233 kb on - strand, within GFF3622at 488.246 kb on + strand, within GFF3622at 488.247 kb on - strand, within GFF3622at 488.247 kb on - strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.393 kb on + strand, within GFF3622at 488.394 kb on - strand, within GFF3622at 488.399 kb on + strand, within GFF3622at 488.400 kb on - strand, within GFF3622at 488.400 kb on - strand, within GFF3622at 488.463 kb on + strand, within GFF3622at 488.463 kb on + strand, within GFF3622at 488.464 kb on - strand, within GFF3622at 488.464 kb on - strand, within GFF3622at 488.465 kb on + strand, within GFF3622at 488.465 kb on + strand, within GFF3622at 488.465 kb on + strand, within GFF3622at 488.466 kb on - strand, within GFF3622at 488.466 kb on - strand, within GFF3622at 488.493 kb on - strand, within GFF3622at 488.493 kb on - strand, within GFF3622at 488.581 kb on - strand, within GFF3622at 488.672 kb on + strand, within GFF3622at 488.672 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.682 kb on + strand, within GFF3622at 488.683 kb on - strand, within GFF3622at 488.683 kb on - strand, within GFF3622at 488.683 kb on - strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.723 kb on + strand, within GFF3622at 488.724 kb on - strand, within GFF3622at 488.724 kb on - strand, within GFF3622at 488.724 kb on - strand, within GFF3622at 488.756 kb on + strand, within GFF3622at 488.756 kb on + strand, within GFF3622at 488.757 kb on - strand, within GFF3622at 488.785 kb on + strandat 488.785 kb on + strandat 488.786 kb on - strandat 488.786 kb on - strandat 488.786 kb on - strandat 488.786 kb on - strandat 488.910 kb on - strandat 488.910 kb on - strandat 488.910 kb on - strandat 488.910 kb on - strandat 488.933 kb on + strandat 488.933 kb on + strandat 488.933 kb on + strandat 488.933 kb on + strandat 488.934 kb on - strandat 489.007 kb on + strandat 489.008 kb on - strandat 489.008 kb on - strandat 489.008 kb on - strandat 489.110 kb on + strandat 489.110 kb on + strandat 489.110 kb on + strandat 489.110 kb on + strandat 489.111 kb on - strandat 489.125 kb on + strandat 489.312 kb on + strandat 489.313 kb on - strandat 489.313 kb on - strandat 489.331 kb on + strandat 489.332 kb on - strandat 489.352 kb on + strandat 489.353 kb on - strandat 489.417 kb on - strandat 489.417 kb on - strandat 489.454 kb on - strand, within GFF3623at 489.454 kb on - strand, within GFF3623at 489.475 kb on - strand, within GFF3623at 489.543 kb on + strand, within GFF3623at 489.543 kb on + strand, within GFF3623at 489.544 kb on - strand, within GFF3623at 489.650 kb on + strand, within GFF3623at 489.650 kb on + strand, within GFF3623at 489.650 kb on + strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.651 kb on - strand, within GFF3623at 489.691 kb on - strand, within GFF3623at 489.845 kb on + strand, within GFF3623at 489.845 kb on + strand, within GFF3623at 489.845 kb on + strand, within GFF3623at 489.846 kb on - strand, within GFF3623at 489.846 kb on - strand, within GFF3623at 489.882 kb on + strand, within GFF3623at 489.882 kb on + strand, within GFF3623at 489.883 kb on - strand, within GFF3623at 489.883 kb on - strand, within GFF3623

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
486,633 + GFF3621 0.62 +0.2
486,633 + GFF3621 0.62 -0.3
486,633 + GFF3621 0.62 +0.5
486,633 + GFF3621 0.62 +0.2
486,633 + GFF3621 0.62 -0.4
486,633 + GFF3621 0.62 +1.1
486,634 - GFF3621 0.62 -0.1
486,634 - GFF3621 0.62 -0.4
486,733 + GFF3621 0.69 +1.3
486,733 + GFF3621 0.69 -1.1
486,733 + GFF3621 0.69 -0.7
486,733 + GFF3621 0.69 +0.2
486,734 - GFF3621 0.69 -1.0
486,734 - GFF3621 0.69 -0.1
486,734 - GFF3621 0.69 -0.3
486,734 - GFF3621 0.69 -0.6
486,734 - GFF3621 0.69 -1.1
486,734 - GFF3621 0.69 -0.1
486,830 + GFF3621 0.77 +0.1
486,831 - GFF3621 0.77 +1.2
486,831 - GFF3621 0.77 -0.5
486,831 - GFF3621 0.77 +0.0
486,831 - GFF3621 0.77 +0.2
486,994 + GFF3621 0.89 +0.5
487,016 + -0.2
487,063 + -0.3
487,064 - -0.1
487,064 - +1.1
487,069 + -0.1
487,069 + +0.8
487,070 - -0.1
487,070 - +0.1
487,092 + -0.1
487,093 - -0.2
487,234 - -0.6
487,384 + +0.1
487,385 - -0.6
487,385 - -0.4
487,427 + +0.0
487,446 + +0.6
487,446 + +0.2
487,447 - -0.5
487,447 - +0.2
487,447 - -0.1
487,605 + +0.2
487,606 - -1.6
487,620 + -0.6
487,620 + -0.4
487,621 - -0.2
487,621 - +0.8
487,621 - +0.2
487,625 + -0.9
487,625 + -0.4
487,625 + +0.3
487,626 - +0.1
487,626 - -0.8
487,626 - -0.3
487,626 - -0.5
487,626 - -0.0
487,699 + +0.7
487,699 + -0.3
487,699 + +0.5
487,700 - -0.6
487,700 - -0.7
487,902 + GFF3622 0.22 -0.0
487,902 + GFF3622 0.22 -0.3
487,957 + GFF3622 0.26 -0.9
487,958 - GFF3622 0.26 +0.1
487,958 - GFF3622 0.26 -0.2
487,958 - GFF3622 0.26 -0.2
487,958 - GFF3622 0.26 -1.7
487,958 - GFF3622 0.26 +0.0
487,958 - GFF3622 0.26 +0.4
487,958 - GFF3622 0.26 +0.2
488,042 + GFF3622 0.33 -0.4
488,043 - GFF3622 0.33 +0.2
488,184 + GFF3622 0.44 -1.1
488,184 + GFF3622 0.44 -0.9
488,184 + GFF3622 0.44 -0.7
488,184 + GFF3622 0.44 -0.6
488,184 + GFF3622 0.44 +0.2
488,184 + GFF3622 0.44 -0.5
488,185 - GFF3622 0.44 -0.0
488,185 - GFF3622 0.44 -0.1
488,185 - GFF3622 0.44 +0.2
488,185 - GFF3622 0.44 -0.8
488,185 - GFF3622 0.44 +0.1
488,185 - GFF3622 0.44 +0.5
488,185 - GFF3622 0.44 +1.1
488,186 + GFF3622 0.44 +0.3
488,186 + GFF3622 0.44 -1.2
488,186 + GFF3622 0.44 -0.4
488,186 + GFF3622 0.44 +1.5
488,186 + GFF3622 0.44 -0.6
488,186 + GFF3622 0.44 +1.2
488,186 + GFF3622 0.44 -0.5
488,187 - GFF3622 0.44 -0.1
488,187 - GFF3622 0.44 -0.7
488,187 - GFF3622 0.44 +0.1
488,187 - GFF3622 0.44 +0.4
488,187 - GFF3622 0.44 -0.8
488,187 - GFF3622 0.44 -0.2
488,187 - GFF3622 0.44 -0.0
488,187 - GFF3622 0.44 -0.2
488,232 + GFF3622 0.47 -0.2
488,232 + GFF3622 0.47 -0.5
488,232 + GFF3622 0.47 -0.3
488,232 + GFF3622 0.47 +0.3
488,232 + GFF3622 0.47 -0.1
488,233 - GFF3622 0.47 +0.2
488,233 - GFF3622 0.47 +0.8
488,233 - GFF3622 0.47 -0.5
488,233 - GFF3622 0.47 -0.3
488,233 - GFF3622 0.47 +0.5
488,233 - GFF3622 0.47 +0.2
488,233 - GFF3622 0.47 -0.8
488,233 - GFF3622 0.47 -0.2
488,233 - GFF3622 0.47 +0.9
488,246 + GFF3622 0.48 -1.1
488,247 - GFF3622 0.49 +0.3
488,247 - GFF3622 0.49 -0.2
488,393 + GFF3622 0.60 -0.4
488,393 + GFF3622 0.60 -0.4
488,393 + GFF3622 0.60 +0.4
488,393 + GFF3622 0.60 -0.9
488,393 + GFF3622 0.60 -0.5
488,394 - GFF3622 0.60 -0.3
488,399 + GFF3622 0.60 -0.0
488,400 - GFF3622 0.60 +0.3
488,400 - GFF3622 0.60 +0.3
488,463 + GFF3622 0.65 +0.2
488,463 + GFF3622 0.65 +0.2
488,464 - GFF3622 0.65 -0.0
488,464 - GFF3622 0.65 +1.1
488,465 + GFF3622 0.65 +0.5
488,465 + GFF3622 0.65 -0.8
488,465 + GFF3622 0.65 +0.4
488,466 - GFF3622 0.66 +0.0
488,466 - GFF3622 0.66 +0.2
488,493 - GFF3622 0.68 -0.6
488,493 - GFF3622 0.68 +0.2
488,581 - GFF3622 0.75 +0.1
488,672 + GFF3622 0.82 -1.4
488,672 + GFF3622 0.82 -0.1
488,682 + GFF3622 0.82 -0.3
488,682 + GFF3622 0.82 +0.3
488,682 + GFF3622 0.82 -0.9
488,682 + GFF3622 0.82 -0.4
488,683 - GFF3622 0.82 -0.9
488,683 - GFF3622 0.82 -1.4
488,683 - GFF3622 0.82 +0.3
488,723 + GFF3622 0.86 +0.1
488,723 + GFF3622 0.86 +0.3
488,723 + GFF3622 0.86 +0.7
488,723 + GFF3622 0.86 +0.5
488,724 - GFF3622 0.86 -0.5
488,724 - GFF3622 0.86 -0.4
488,724 - GFF3622 0.86 +0.6
488,756 + GFF3622 0.88 -0.4
488,756 + GFF3622 0.88 +0.6
488,757 - GFF3622 0.88 -0.1
488,785 + -0.1
488,785 + +0.8
488,786 - +1.3
488,786 - +0.1
488,786 - +1.3
488,786 - +0.5
488,910 - -0.6
488,910 - +0.3
488,910 - +0.8
488,910 - -0.3
488,933 + -0.7
488,933 + -0.5
488,933 + +0.2
488,933 + +0.5
488,934 - -1.1
489,007 + -0.9
489,008 - +0.1
489,008 - -0.5
489,008 - +0.9
489,110 + -0.3
489,110 + +0.7
489,110 + -0.2
489,110 + +0.3
489,111 - +0.6
489,125 + -0.1
489,312 + -0.7
489,313 - -0.5
489,313 - -1.3
489,331 + -1.3
489,332 - -0.2
489,352 + +0.1
489,353 - -0.2
489,417 - -0.9
489,417 - -0.4
489,454 - GFF3623 0.12 -0.5
489,454 - GFF3623 0.12 +0.5
489,475 - GFF3623 0.14 +0.8
489,543 + GFF3623 0.21 -1.3
489,543 + GFF3623 0.21 +0.0
489,544 - GFF3623 0.21 -0.3
489,650 + GFF3623 0.32 -0.4
489,650 + GFF3623 0.32 +1.2
489,650 + GFF3623 0.32 -0.8
489,651 - GFF3623 0.32 -0.5
489,651 - GFF3623 0.32 -2.4
489,651 - GFF3623 0.32 -1.3
489,651 - GFF3623 0.32 -0.9
489,651 - GFF3623 0.32 +0.1
489,651 - GFF3623 0.32 +0.1
489,691 - GFF3623 0.36 -0.1
489,845 + GFF3623 0.51 -0.2
489,845 + GFF3623 0.51 -0.4
489,845 + GFF3623 0.51 -0.9
489,846 - GFF3623 0.51 +0.1
489,846 - GFF3623 0.51 +0.5
489,882 + GFF3623 0.55 -0.6
489,882 + GFF3623 0.55 +0.2
489,883 - GFF3623 0.55 +0.3
489,883 - GFF3623 0.55 +0.1

Or see this region's nucleotide sequence