Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3547 and GFF3548 are separated by 215 nucleotides GFF3548 and GFF3549 are separated by 187 nucleotides GFF3549 and GFF3550 are separated by 113 nucleotides GFF3550 and GFF3551 overlap by 1 nucleotides
GFF3547 - Inosine-5'-monophosphate dehydrogenase, at 402,676 to 404,202
GFF3547
GFF3548 - hypothetical protein, at 404,418 to 404,942
GFF3548
GFF3549 - hypothetical protein, at 405,130 to 405,696
GFF3549
GFF3550 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 405,810 to 406,652
GFF3550
GFF3551 - Beta-lactamase OXA-18, at 406,652 to 407,500
GFF3551
Position (kb) 405
406 Strain fitness (log2 ratio) -1
0
1 at 404.309 kb on - strand at 404.456 kb on - strand at 404.474 kb on - strand, within GFF3548 at 404.566 kb on + strand, within GFF3548 at 404.609 kb on - strand, within GFF3548 at 404.611 kb on + strand, within GFF3548 at 404.612 kb on - strand, within GFF3548 at 404.626 kb on + strand, within GFF3548 at 404.636 kb on - strand, within GFF3548 at 404.674 kb on + strand, within GFF3548 at 404.801 kb on + strand, within GFF3548 at 404.801 kb on + strand, within GFF3548 at 404.802 kb on - strand, within GFF3548 at 404.935 kb on - strand at 404.935 kb on - strand at 404.995 kb on + strand at 404.995 kb on + strand at 404.996 kb on - strand at 404.996 kb on - strand at 404.996 kb on - strand at 405.064 kb on - strand at 405.072 kb on + strand at 405.072 kb on + strand at 405.072 kb on + strand at 405.072 kb on + strand at 405.235 kb on + strand, within GFF3549 at 405.235 kb on + strand, within GFF3549 at 405.235 kb on + strand, within GFF3549 at 405.235 kb on + strand, within GFF3549 at 405.236 kb on - strand, within GFF3549 at 405.247 kb on + strand, within GFF3549 at 405.248 kb on - strand, within GFF3549 at 405.286 kb on + strand, within GFF3549 at 405.287 kb on - strand, within GFF3549 at 405.292 kb on + strand, within GFF3549 at 405.403 kb on + strand, within GFF3549 at 405.403 kb on + strand, within GFF3549 at 405.403 kb on + strand, within GFF3549 at 405.404 kb on - strand, within GFF3549 at 405.404 kb on - strand, within GFF3549 at 405.404 kb on - strand, within GFF3549 at 405.509 kb on + strand, within GFF3549 at 405.509 kb on + strand, within GFF3549 at 405.655 kb on + strand at 405.656 kb on - strand at 405.659 kb on + strand at 405.659 kb on + strand at 405.660 kb on - strand at 405.660 kb on - strand at 405.660 kb on - strand at 405.660 kb on - strand at 405.660 kb on - strand at 405.670 kb on + strand at 405.670 kb on + strand at 405.694 kb on + strand at 405.695 kb on - strand at 405.695 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 404,309 - -0.2 404,456 - +0.4 404,474 - GFF3548 0.11 -0.5 404,566 + GFF3548 0.28 -0.3 404,609 - GFF3548 0.36 +0.1 404,611 + GFF3548 0.37 -0.6 404,612 - GFF3548 0.37 +0.6 404,626 + GFF3548 0.40 +0.7 404,636 - GFF3548 0.42 +1.1 404,674 + GFF3548 0.49 +0.4 404,801 + GFF3548 0.73 +0.2 404,801 + GFF3548 0.73 +0.8 404,802 - GFF3548 0.73 -1.7 404,935 - +0.3 404,935 - +0.4 404,995 + -0.1 404,995 + +1.5 404,996 - +0.4 404,996 - +0.4 404,996 - +0.7 405,064 - +0.8 405,072 + +0.4 405,072 + -0.2 405,072 + -1.0 405,072 + -1.1 405,235 + GFF3549 0.19 -0.6 405,235 + GFF3549 0.19 -0.3 405,235 + GFF3549 0.19 +0.1 405,235 + GFF3549 0.19 -0.1 405,236 - GFF3549 0.19 +0.4 405,247 + GFF3549 0.21 -0.5 405,248 - GFF3549 0.21 -0.8 405,286 + GFF3549 0.28 +0.2 405,287 - GFF3549 0.28 +0.8 405,292 + GFF3549 0.29 -0.8 405,403 + GFF3549 0.48 -0.6 405,403 + GFF3549 0.48 +0.3 405,403 + GFF3549 0.48 +0.5 405,404 - GFF3549 0.48 +0.2 405,404 - GFF3549 0.48 +0.1 405,404 - GFF3549 0.48 -0.0 405,509 + GFF3549 0.67 -0.3 405,509 + GFF3549 0.67 -0.5 405,655 + -1.4 405,656 - +0.1 405,659 + -0.5 405,659 + -1.2 405,660 - +0.9 405,660 - +1.1 405,660 - +0.9 405,660 - -0.5 405,660 - -0.4 405,670 + -0.5 405,670 + +1.5 405,694 + +0.3 405,695 - +0.6 405,695 - -0.0
Or see this region's nucleotide sequence