Strain Fitness in Xanthobacter sp. DMC5 around GFF3510

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3507 and GFF3508 overlap by 4 nucleotidesGFF3508 and GFF3509 overlap by 4 nucleotidesGFF3509 and GFF3510 overlap by 4 nucleotidesGFF3510 and GFF3511 are separated by 684 nucleotides GFF3507 - hypothetical protein, at 361,609 to 362,028 GFF3507 GFF3508 - hypothetical protein, at 362,025 to 362,321 GFF3508 GFF3509 - hypothetical protein, at 362,318 to 362,641 GFF3509 GFF3510 - hypothetical protein, at 362,638 to 363,201 GFF3510 GFF3511 - hypothetical protein, at 363,886 to 364,650 GFF3511 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1at 362.726 kb on + strand, within GFF3510at 362.727 kb on - strand, within GFF3510at 362.727 kb on - strand, within GFF3510at 362.727 kb on - strand, within GFF3510at 363.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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362,726 + GFF3510 0.16 -1.9
362,727 - GFF3510 0.16 -0.1
362,727 - GFF3510 0.16 +0.7
362,727 - GFF3510 0.16 -1.8
363,591 - -0.3

Or see this region's nucleotide sequence