Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3459 and GFF3460 are separated by 19 nucleotides GFF3460 and GFF3461 are separated by 253 nucleotides GFF3461 and GFF3462 are separated by 148 nucleotides
GFF3459 - 1-deoxy-D-xylulose-5-phosphate synthase, at 310,144 to 312,345
GFF3459
GFF3460 - Alcohol dehydrogenase [acceptor], at 312,365 to 313,969
GFF3460
GFF3461 - Translation initiation factor IF-1, at 314,223 to 314,498
GFF3461
GFF3462 - ATP-dependent RNA helicase RhlE, at 314,647 to 316,359
GFF3462
Position (kb) 312
313
314 Strain fitness (log2 ratio) -1
0
1 at 311.572 kb on + strand, within GFF3459 at 311.785 kb on + strand, within GFF3459 at 311.893 kb on + strand, within GFF3459 at 311.893 kb on + strand, within GFF3459 at 311.893 kb on + strand, within GFF3459 at 311.894 kb on - strand, within GFF3459 at 311.894 kb on - strand, within GFF3459 at 311.894 kb on - strand, within GFF3459 at 311.894 kb on - strand, within GFF3459 at 311.956 kb on + strand, within GFF3459 at 311.956 kb on + strand, within GFF3459 at 312.344 kb on - strand at 312.380 kb on + strand at 312.578 kb on + strand, within GFF3460 at 312.579 kb on - strand, within GFF3460 at 312.579 kb on - strand, within GFF3460 at 312.728 kb on + strand, within GFF3460 at 312.728 kb on + strand, within GFF3460 at 312.729 kb on - strand, within GFF3460 at 312.888 kb on - strand, within GFF3460 at 312.918 kb on - strand, within GFF3460 at 312.920 kb on + strand, within GFF3460 at 312.920 kb on + strand, within GFF3460 at 312.920 kb on + strand, within GFF3460 at 312.921 kb on - strand, within GFF3460 at 312.921 kb on - strand, within GFF3460 at 312.968 kb on + strand, within GFF3460 at 312.969 kb on - strand, within GFF3460 at 313.457 kb on + strand, within GFF3460 at 313.683 kb on - strand, within GFF3460 at 313.769 kb on + strand, within GFF3460 at 313.769 kb on + strand, within GFF3460 at 313.769 kb on + strand, within GFF3460 at 313.770 kb on - strand, within GFF3460 at 313.770 kb on - strand, within GFF3460 at 313.945 kb on + strand at 314.547 kb on - strand at 314.547 kb on - strand at 314.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 311,572 + GFF3459 0.65 +0.0 311,785 + GFF3459 0.75 +0.2 311,893 + GFF3459 0.79 +0.2 311,893 + GFF3459 0.79 -0.2 311,893 + GFF3459 0.79 -0.2 311,894 - GFF3459 0.79 +0.8 311,894 - GFF3459 0.79 +0.4 311,894 - GFF3459 0.79 +0.6 311,894 - GFF3459 0.79 +0.0 311,956 + GFF3459 0.82 +0.5 311,956 + GFF3459 0.82 -0.1 312,344 - -0.1 312,380 + +1.0 312,578 + GFF3460 0.13 +0.0 312,579 - GFF3460 0.13 -1.7 312,579 - GFF3460 0.13 +0.9 312,728 + GFF3460 0.23 -0.1 312,728 + GFF3460 0.23 -1.0 312,729 - GFF3460 0.23 +1.2 312,888 - GFF3460 0.33 -1.2 312,918 - GFF3460 0.34 -0.2 312,920 + GFF3460 0.35 +0.0 312,920 + GFF3460 0.35 -0.1 312,920 + GFF3460 0.35 -0.6 312,921 - GFF3460 0.35 +1.1 312,921 - GFF3460 0.35 -0.1 312,968 + GFF3460 0.38 +0.5 312,969 - GFF3460 0.38 +0.1 313,457 + GFF3460 0.68 +0.9 313,683 - GFF3460 0.82 +0.2 313,769 + GFF3460 0.87 -0.1 313,769 + GFF3460 0.87 -0.5 313,769 + GFF3460 0.87 -0.8 313,770 - GFF3460 0.88 -0.2 313,770 - GFF3460 0.88 +0.2 313,945 + -0.1 314,547 - -0.6 314,547 - +0.4 314,547 - +0.5
Or see this region's nucleotide sequence