Strain Fitness in Xanthobacter sp. DMC5 around GFF3453

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3452 and GFF3453 are separated by 279 nucleotidesGFF3453 and GFF3454 are separated by 194 nucleotides GFF3452 - Phthiocerol synthesis polyketide synthase type I PpsC, at 302,315 to 303,319 GFF3452 GFF3453 - Leu/Ile/Val-binding protein, at 303,599 to 304,828 GFF3453 GFF3454 - High-affinity branched-chain amino acid transport system permease protein LivH, at 305,023 to 305,895 GFF3454 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1at 302.640 kb on + strand, within GFF3452at 302.641 kb on - strand, within GFF3452at 302.728 kb on - strand, within GFF3452at 302.925 kb on + strand, within GFF3452at 302.925 kb on + strand, within GFF3452at 302.926 kb on - strand, within GFF3452at 302.928 kb on + strand, within GFF3452at 302.929 kb on - strand, within GFF3452at 302.929 kb on - strand, within GFF3452at 303.009 kb on + strand, within GFF3452at 303.010 kb on - strand, within GFF3452at 303.019 kb on - strand, within GFF3452at 303.019 kb on - strand, within GFF3452at 303.147 kb on + strand, within GFF3452at 303.147 kb on + strand, within GFF3452at 303.148 kb on - strand, within GFF3452at 303.148 kb on - strand, within GFF3452at 303.148 kb on - strand, within GFF3452at 303.148 kb on - strand, within GFF3452at 303.364 kb on - strandat 303.442 kb on + strandat 303.443 kb on - strandat 303.443 kb on - strandat 303.443 kb on - strandat 303.443 kb on - strandat 303.443 kb on - strandat 303.479 kb on - strandat 303.634 kb on + strandat 303.634 kb on + strandat 303.707 kb on + strandat 303.708 kb on - strandat 303.911 kb on + strand, within GFF3453at 303.912 kb on - strand, within GFF3453at 303.912 kb on - strand, within GFF3453at 303.912 kb on - strand, within GFF3453at 303.912 kb on - strand, within GFF3453at 303.912 kb on - strand, within GFF3453at 303.912 kb on - strand, within GFF3453at 303.912 kb on - strand, within GFF3453at 303.969 kb on - strand, within GFF3453at 304.019 kb on + strand, within GFF3453at 304.019 kb on + strand, within GFF3453at 304.019 kb on + strand, within GFF3453at 304.020 kb on - strand, within GFF3453at 304.020 kb on - strand, within GFF3453at 304.020 kb on - strand, within GFF3453at 304.020 kb on - strand, within GFF3453at 304.230 kb on - strand, within GFF3453at 304.358 kb on + strand, within GFF3453at 304.358 kb on + strand, within GFF3453at 304.359 kb on - strand, within GFF3453at 304.359 kb on - strand, within GFF3453at 304.469 kb on + strand, within GFF3453at 304.469 kb on + strand, within GFF3453at 304.469 kb on + strand, within GFF3453at 304.520 kb on + strand, within GFF3453at 304.520 kb on + strand, within GFF3453at 304.521 kb on - strand, within GFF3453at 304.533 kb on - strand, within GFF3453at 304.533 kb on - strand, within GFF3453at 304.571 kb on + strand, within GFF3453at 304.572 kb on - strand, within GFF3453at 305.057 kb on + strandat 305.057 kb on + strandat 305.074 kb on + strandat 305.074 kb on + strandat 305.074 kb on + strandat 305.074 kb on + strandat 305.075 kb on - strandat 305.160 kb on + strand, within GFF3454at 305.160 kb on + strand, within GFF3454at 305.160 kb on + strand, within GFF3454at 305.161 kb on - strand, within GFF3454at 305.161 kb on - strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.164 kb on + strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.165 kb on - strand, within GFF3454at 305.166 kb on - strand, within GFF3454at 305.173 kb on + strand, within GFF3454at 305.206 kb on + strand, within GFF3454at 305.207 kb on - strand, within GFF3454at 305.207 kb on - strand, within GFF3454at 305.377 kb on + strand, within GFF3454at 305.587 kb on + strand, within GFF3454at 305.587 kb on + strand, within GFF3454at 305.588 kb on - strand, within GFF3454at 305.588 kb on - strand, within GFF3454at 305.654 kb on - strand, within GFF3454at 305.680 kb on + strand, within GFF3454at 305.680 kb on + strand, within GFF3454at 305.734 kb on + strand, within GFF3454at 305.735 kb on - strand, within GFF3454at 305.735 kb on - strand, within GFF3454at 305.735 kb on - strand, within GFF3454at 305.791 kb on + strand, within GFF3454at 305.791 kb on + strand, within GFF3454at 305.792 kb on - strand, within GFF3454at 305.792 kb on - strand, within GFF3454at 305.792 kb on - strand, within GFF3454at 305.821 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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302,640 + GFF3452 0.32 +0.6
302,641 - GFF3452 0.32 -0.5
302,728 - GFF3452 0.41 +0.7
302,925 + GFF3452 0.61 -0.3
302,925 + GFF3452 0.61 -0.4
302,926 - GFF3452 0.61 -1.2
302,928 + GFF3452 0.61 +0.2
302,929 - GFF3452 0.61 +0.7
302,929 - GFF3452 0.61 -0.6
303,009 + GFF3452 0.69 -0.1
303,010 - GFF3452 0.69 -0.2
303,019 - GFF3452 0.70 +0.4
303,019 - GFF3452 0.70 +0.5
303,147 + GFF3452 0.83 +0.2
303,147 + GFF3452 0.83 +0.5
303,148 - GFF3452 0.83 -0.4
303,148 - GFF3452 0.83 +0.3
303,148 - GFF3452 0.83 -0.1
303,148 - GFF3452 0.83 +0.3
303,364 - -0.4
303,442 + -0.4
303,443 - -0.7
303,443 - -0.3
303,443 - -0.8
303,443 - +0.5
303,443 - +0.1
303,479 - -0.4
303,634 + +1.3
303,634 + -0.3
303,707 + +1.2
303,708 - -0.1
303,911 + GFF3453 0.25 +0.4
303,912 - GFF3453 0.25 +0.4
303,912 - GFF3453 0.25 -0.9
303,912 - GFF3453 0.25 +0.3
303,912 - GFF3453 0.25 -1.4
303,912 - GFF3453 0.25 +0.5
303,912 - GFF3453 0.25 +0.8
303,912 - GFF3453 0.25 +0.0
303,969 - GFF3453 0.30 -0.8
304,019 + GFF3453 0.34 +1.5
304,019 + GFF3453 0.34 -2.9
304,019 + GFF3453 0.34 +0.2
304,020 - GFF3453 0.34 +0.1
304,020 - GFF3453 0.34 +0.4
304,020 - GFF3453 0.34 +0.4
304,020 - GFF3453 0.34 +1.1
304,230 - GFF3453 0.51 -0.4
304,358 + GFF3453 0.62 -0.1
304,358 + GFF3453 0.62 +0.5
304,359 - GFF3453 0.62 -0.0
304,359 - GFF3453 0.62 -0.4
304,469 + GFF3453 0.71 -0.9
304,469 + GFF3453 0.71 -0.1
304,469 + GFF3453 0.71 +0.7
304,520 + GFF3453 0.75 -0.1
304,520 + GFF3453 0.75 -0.2
304,521 - GFF3453 0.75 -0.2
304,533 - GFF3453 0.76 -0.5
304,533 - GFF3453 0.76 +0.3
304,571 + GFF3453 0.79 -0.4
304,572 - GFF3453 0.79 +0.3
305,057 + +0.7
305,057 + +0.1
305,074 + +0.9
305,074 + -1.2
305,074 + -0.1
305,074 + +0.2
305,075 - +0.3
305,160 + GFF3454 0.16 +1.0
305,160 + GFF3454 0.16 -1.0
305,160 + GFF3454 0.16 -1.5
305,161 - GFF3454 0.16 -0.4
305,161 - GFF3454 0.16 +0.1
305,164 + GFF3454 0.16 +0.2
305,164 + GFF3454 0.16 +0.2
305,164 + GFF3454 0.16 -0.5
305,164 + GFF3454 0.16 -0.3
305,165 - GFF3454 0.16 +0.3
305,165 - GFF3454 0.16 -0.5
305,165 - GFF3454 0.16 +0.1
305,165 - GFF3454 0.16 +0.9
305,165 - GFF3454 0.16 -0.0
305,165 - GFF3454 0.16 +0.3
305,166 - GFF3454 0.16 +0.3
305,173 + GFF3454 0.17 +0.4
305,206 + GFF3454 0.21 -0.1
305,207 - GFF3454 0.21 -0.0
305,207 - GFF3454 0.21 +0.4
305,377 + GFF3454 0.41 -0.1
305,587 + GFF3454 0.65 -0.5
305,587 + GFF3454 0.65 -0.1
305,588 - GFF3454 0.65 +0.1
305,588 - GFF3454 0.65 +0.1
305,654 - GFF3454 0.72 +0.5
305,680 + GFF3454 0.75 +0.0
305,680 + GFF3454 0.75 +0.3
305,734 + GFF3454 0.81 -0.3
305,735 - GFF3454 0.82 +0.7
305,735 - GFF3454 0.82 +1.0
305,735 - GFF3454 0.82 -0.1
305,791 + GFF3454 0.88 +0.1
305,791 + GFF3454 0.88 +0.7
305,792 - GFF3454 0.88 -0.5
305,792 - GFF3454 0.88 -0.2
305,792 - GFF3454 0.88 +1.1
305,821 + +0.7

Or see this region's nucleotide sequence