Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF344 and GFF345 are separated by 282 nucleotides
GFF344 - Chaperone protein HtpG, at 347,747 to 350,356
GFF344
GFF345 - hypothetical protein, at 350,639 to 351,358
GFF345
Position (kb) 350
351
352 Strain fitness (log2 ratio) -2
-1
0
1 at 349.661 kb on + strand, within GFF344 at 349.685 kb on + strand, within GFF344 at 349.685 kb on + strand, within GFF344 at 349.686 kb on - strand, within GFF344 at 349.686 kb on - strand, within GFF344 at 349.702 kb on + strand, within GFF344 at 349.702 kb on + strand, within GFF344 at 349.703 kb on - strand, within GFF344 at 349.712 kb on + strand, within GFF344 at 349.713 kb on - strand, within GFF344 at 349.756 kb on + strand, within GFF344 at 349.757 kb on - strand, within GFF344 at 349.757 kb on - strand, within GFF344 at 349.757 kb on - strand, within GFF344 at 349.843 kb on + strand, within GFF344 at 349.844 kb on - strand, within GFF344 at 349.844 kb on - strand, within GFF344 at 349.918 kb on + strand, within GFF344 at 349.918 kb on + strand, within GFF344 at 349.918 kb on + strand, within GFF344 at 349.918 kb on + strand, within GFF344 at 349.918 kb on + strand, within GFF344 at 349.918 kb on + strand, within GFF344 at 349.919 kb on - strand, within GFF344 at 349.919 kb on - strand, within GFF344 at 349.957 kb on + strand, within GFF344 at 349.958 kb on - strand, within GFF344 at 349.984 kb on + strand, within GFF344 at 349.984 kb on + strand, within GFF344 at 349.985 kb on - strand, within GFF344 at 350.050 kb on - strand, within GFF344 at 350.099 kb on + strand at 350.099 kb on + strand at 350.099 kb on + strand at 350.100 kb on - strand at 350.100 kb on - strand at 350.104 kb on - strand at 350.195 kb on - strand at 350.196 kb on + strand at 350.196 kb on + strand at 350.211 kb on - strand at 350.239 kb on + strand at 350.481 kb on - strand at 350.536 kb on + strand at 350.537 kb on - strand at 350.616 kb on + strand at 350.616 kb on + strand at 350.617 kb on - strand at 350.617 kb on - strand at 350.617 kb on - strand at 350.617 kb on - strand at 350.617 kb on - strand at 350.641 kb on - strand at 350.786 kb on - strand, within GFF345 at 350.852 kb on + strand, within GFF345 at 350.852 kb on + strand, within GFF345 at 350.853 kb on - strand, within GFF345 at 350.965 kb on + strand, within GFF345 at 350.966 kb on - strand, within GFF345 at 351.246 kb on + strand, within GFF345 at 351.246 kb on + strand, within GFF345 at 351.247 kb on - strand, within GFF345 at 351.247 kb on - strand, within GFF345 at 351.309 kb on - strand at 351.309 kb on - strand at 351.343 kb on + strand at 351.343 kb on + strand at 351.345 kb on + strand at 351.345 kb on + strand at 351.345 kb on + strand at 351.346 kb on - strand at 351.346 kb on - strand at 351.370 kb on - strand at 351.401 kb on - strand at 351.401 kb on - strand at 351.402 kb on + strand at 351.402 kb on + strand at 351.403 kb on - strand at 351.403 kb on - strand at 351.403 kb on - strand at 351.443 kb on - strand at 351.500 kb on + strand at 351.500 kb on + strand at 351.501 kb on - strand at 351.501 kb on - strand at 351.516 kb on - strand at 351.516 kb on - strand at 351.759 kb on + strand at 351.759 kb on + strand at 351.760 kb on - strand at 351.760 kb on - strand at 351.760 kb on - strand at 351.760 kb on - strand at 351.760 kb on - strand at 351.789 kb on + strand at 351.790 kb on - strand at 351.791 kb on + strand at 351.791 kb on + strand at 351.894 kb on + strand at 351.894 kb on + strand at 351.894 kb on + strand at 351.895 kb on - strand at 351.899 kb on - strand at 351.899 kb on - strand at 351.928 kb on + strand at 351.928 kb on + strand at 351.929 kb on - strand at 351.929 kb on - strand at 352.287 kb on - strand at 352.300 kb on + strand at 352.300 kb on + strand at 352.302 kb on + strand at 352.303 kb on - strand at 352.304 kb on + strand at 352.305 kb on - strand at 352.351 kb on + strand at 352.351 kb on + strand at 352.351 kb on + strand at 352.352 kb on - strand at 352.353 kb on + strand at 352.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 349,661 + GFF344 0.73 -0.6 349,685 + GFF344 0.74 -0.4 349,685 + GFF344 0.74 -0.8 349,686 - GFF344 0.74 +1.1 349,686 - GFF344 0.74 +0.4 349,702 + GFF344 0.75 -0.2 349,702 + GFF344 0.75 -0.0 349,703 - GFF344 0.75 -0.2 349,712 + GFF344 0.75 -0.2 349,713 - GFF344 0.75 -1.5 349,756 + GFF344 0.77 -0.5 349,757 - GFF344 0.77 -0.4 349,757 - GFF344 0.77 +0.1 349,757 - GFF344 0.77 +0.3 349,843 + GFF344 0.80 +0.5 349,844 - GFF344 0.80 +0.1 349,844 - GFF344 0.80 -1.1 349,918 + GFF344 0.83 +0.0 349,918 + GFF344 0.83 -0.0 349,918 + GFF344 0.83 -0.3 349,918 + GFF344 0.83 -0.3 349,918 + GFF344 0.83 -0.2 349,918 + GFF344 0.83 -1.2 349,919 - GFF344 0.83 -1.0 349,919 - GFF344 0.83 +0.1 349,957 + GFF344 0.85 +0.2 349,958 - GFF344 0.85 +0.1 349,984 + GFF344 0.86 +0.0 349,984 + GFF344 0.86 +0.2 349,985 - GFF344 0.86 -0.4 350,050 - GFF344 0.88 -0.8 350,099 + -1.5 350,099 + +0.1 350,099 + +0.3 350,100 - -0.2 350,100 - +0.8 350,104 - -1.2 350,195 - +0.1 350,196 + +0.5 350,196 + -0.7 350,211 - -0.5 350,239 + +1.2 350,481 - +0.6 350,536 + -0.4 350,537 - +0.0 350,616 + +1.4 350,616 + -0.3 350,617 - +0.4 350,617 - +0.2 350,617 - +0.0 350,617 - +0.9 350,617 - +0.0 350,641 - +0.1 350,786 - GFF345 0.20 +0.2 350,852 + GFF345 0.30 -0.1 350,852 + GFF345 0.30 +1.4 350,853 - GFF345 0.30 -0.0 350,965 + GFF345 0.45 -0.0 350,966 - GFF345 0.45 +0.8 351,246 + GFF345 0.84 -0.2 351,246 + GFF345 0.84 -0.1 351,247 - GFF345 0.84 +0.6 351,247 - GFF345 0.84 -0.8 351,309 - -0.5 351,309 - +0.7 351,343 + -0.3 351,343 + +0.3 351,345 + -2.0 351,345 + -0.4 351,345 + -0.1 351,346 - +0.0 351,346 - -0.0 351,370 - -0.2 351,401 - -0.9 351,401 - +0.1 351,402 + -0.0 351,402 + +0.6 351,403 - -0.3 351,403 - -0.5 351,403 - -0.3 351,443 - +0.8 351,500 + -0.5 351,500 + +0.2 351,501 - -0.3 351,501 - +0.1 351,516 - -0.4 351,516 - +0.2 351,759 + +0.3 351,759 + -0.3 351,760 - +0.3 351,760 - +0.9 351,760 - +0.1 351,760 - -0.5 351,760 - +0.1 351,789 + -0.0 351,790 - -0.2 351,791 + +0.3 351,791 + -0.3 351,894 + -0.2 351,894 + +0.5 351,894 + +1.4 351,895 - +0.3 351,899 - -2.0 351,899 - +0.0 351,928 + -0.3 351,928 + -0.6 351,929 - +0.2 351,929 - +0.3 352,287 - -0.6 352,300 + +0.2 352,300 + +0.8 352,302 + +0.2 352,303 - +0.2 352,304 + -0.3 352,305 - +0.6 352,351 + +0.1 352,351 + -0.9 352,351 + +1.7 352,352 - -0.3 352,353 + +0.5 352,357 + -0.0
Or see this region's nucleotide sequence