Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3435 and GFF3436 overlap by 4 nucleotides GFF3436 and GFF3437 are separated by 230 nucleotides GFF3437 and GFF3438 are separated by 62 nucleotides
GFF3435 - hypothetical protein, at 287,326 to 288,210
GFF3435
GFF3436 - Phosphate-import permease protein PhnE, at 288,207 to 289,067
GFF3436
GFF3437 - hypothetical protein, at 289,298 to 289,939
GFF3437
GFF3438 - HTH-type transcriptional repressor NagR, at 290,002 to 290,742
GFF3438
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1 at 287.227 kb on + strand at 287.261 kb on + strand at 287.261 kb on + strand at 287.622 kb on + strand, within GFF3435 at 287.622 kb on + strand, within GFF3435 at 287.889 kb on + strand, within GFF3435 at 287.890 kb on - strand, within GFF3435 at 288.097 kb on + strand, within GFF3435 at 288.098 kb on - strand, within GFF3435 at 288.459 kb on + strand, within GFF3436 at 288.459 kb on + strand, within GFF3436 at 288.459 kb on + strand, within GFF3436 at 288.459 kb on + strand, within GFF3436 at 288.460 kb on - strand, within GFF3436 at 288.645 kb on + strand, within GFF3436 at 288.645 kb on + strand, within GFF3436 at 288.645 kb on + strand, within GFF3436 at 288.646 kb on - strand, within GFF3436 at 288.646 kb on - strand, within GFF3436 at 288.646 kb on - strand, within GFF3436 at 288.646 kb on - strand, within GFF3436 at 288.646 kb on - strand, within GFF3436 at 288.858 kb on + strand, within GFF3436 at 288.859 kb on - strand, within GFF3436 at 288.861 kb on + strand, within GFF3436 at 288.861 kb on + strand, within GFF3436 at 288.862 kb on - strand, within GFF3436 at 288.862 kb on - strand, within GFF3436 at 289.302 kb on + strand at 289.302 kb on + strand at 289.503 kb on + strand, within GFF3437 at 289.503 kb on + strand, within GFF3437 at 289.503 kb on + strand, within GFF3437 at 289.503 kb on + strand, within GFF3437 at 289.504 kb on - strand, within GFF3437 at 289.504 kb on - strand, within GFF3437 at 289.504 kb on - strand, within GFF3437 at 289.504 kb on - strand, within GFF3437 at 289.899 kb on + strand at 289.899 kb on + strand at 289.899 kb on + strand at 289.899 kb on + strand at 289.948 kb on - strand at 290.003 kb on + strand at 290.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 287,227 + +0.5 287,261 + +1.0 287,261 + +0.2 287,622 + GFF3435 0.33 +0.3 287,622 + GFF3435 0.33 +0.1 287,889 + GFF3435 0.64 +0.5 287,890 - GFF3435 0.64 +0.1 288,097 + GFF3435 0.87 -0.8 288,098 - GFF3435 0.87 +0.0 288,459 + GFF3436 0.29 -0.7 288,459 + GFF3436 0.29 +0.6 288,459 + GFF3436 0.29 -0.1 288,459 + GFF3436 0.29 -2.3 288,460 - GFF3436 0.29 +1.0 288,645 + GFF3436 0.51 +0.3 288,645 + GFF3436 0.51 -1.0 288,645 + GFF3436 0.51 -1.2 288,646 - GFF3436 0.51 -0.1 288,646 - GFF3436 0.51 -0.6 288,646 - GFF3436 0.51 +0.5 288,646 - GFF3436 0.51 +1.0 288,646 - GFF3436 0.51 -0.4 288,858 + GFF3436 0.76 -0.4 288,859 - GFF3436 0.76 -0.5 288,861 + GFF3436 0.76 -0.5 288,861 + GFF3436 0.76 +0.1 288,862 - GFF3436 0.76 -1.0 288,862 - GFF3436 0.76 -0.3 289,302 + +0.1 289,302 + +0.7 289,503 + GFF3437 0.32 -0.5 289,503 + GFF3437 0.32 -0.4 289,503 + GFF3437 0.32 +0.7 289,503 + GFF3437 0.32 -0.1 289,504 - GFF3437 0.32 +0.5 289,504 - GFF3437 0.32 -1.3 289,504 - GFF3437 0.32 -0.0 289,504 - GFF3437 0.32 +0.3 289,899 + -0.7 289,899 + -0.0 289,899 + +0.3 289,899 + -0.5 289,948 - -1.1 290,003 + -0.4 290,004 - +0.8
Or see this region's nucleotide sequence