Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3428 and GFF3429 are separated by 17 nucleotides GFF3429 and GFF3430 are separated by 97 nucleotides
GFF3428 - hypothetical protein, at 276,807 to 279,047
GFF3428
GFF3429 - HTH-type transcriptional regulator CdhR, at 279,065 to 280,168
GFF3429
GFF3430 - L-serine dehydratase 2, at 280,266 to 281,612
GFF3430
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1 at 278.175 kb on + strand, within GFF3428 at 278.175 kb on + strand, within GFF3428 at 278.175 kb on + strand, within GFF3428 at 278.175 kb on + strand, within GFF3428 at 278.176 kb on - strand, within GFF3428 at 278.177 kb on + strand, within GFF3428 at 278.178 kb on - strand, within GFF3428 at 278.389 kb on + strand, within GFF3428 at 278.389 kb on + strand, within GFF3428 at 278.389 kb on + strand, within GFF3428 at 278.389 kb on + strand, within GFF3428 at 278.389 kb on + strand, within GFF3428 at 278.390 kb on - strand, within GFF3428 at 278.390 kb on - strand, within GFF3428 at 278.433 kb on + strand, within GFF3428 at 278.487 kb on + strand, within GFF3428 at 278.488 kb on - strand, within GFF3428 at 278.488 kb on - strand, within GFF3428 at 278.985 kb on + strand at 278.986 kb on - strand at 279.066 kb on + strand at 279.285 kb on + strand, within GFF3429 at 279.285 kb on + strand, within GFF3429 at 279.285 kb on + strand, within GFF3429 at 279.286 kb on - strand, within GFF3429 at 279.286 kb on - strand, within GFF3429 at 279.678 kb on + strand, within GFF3429 at 279.678 kb on + strand, within GFF3429 at 279.684 kb on + strand, within GFF3429 at 279.684 kb on + strand, within GFF3429 at 279.685 kb on - strand, within GFF3429 at 279.685 kb on - strand, within GFF3429 at 279.796 kb on - strand, within GFF3429 at 279.796 kb on - strand, within GFF3429 at 279.856 kb on + strand, within GFF3429 at 279.856 kb on + strand, within GFF3429 at 279.856 kb on + strand, within GFF3429 at 279.856 kb on + strand, within GFF3429 at 279.856 kb on + strand, within GFF3429 at 279.857 kb on - strand, within GFF3429 at 279.857 kb on - strand, within GFF3429 at 279.857 kb on - strand, within GFF3429 at 279.858 kb on + strand, within GFF3429 at 279.858 kb on + strand, within GFF3429 at 279.858 kb on + strand, within GFF3429 at 279.858 kb on + strand, within GFF3429 at 279.859 kb on - strand, within GFF3429 at 279.859 kb on - strand, within GFF3429 at 280.276 kb on + strand at 280.604 kb on + strand, within GFF3430 at 280.604 kb on + strand, within GFF3430 at 280.605 kb on - strand, within GFF3430 at 280.605 kb on - strand, within GFF3430 at 280.680 kb on + strand, within GFF3430 at 280.680 kb on + strand, within GFF3430 at 280.681 kb on - strand, within GFF3430 at 281.143 kb on - strand, within GFF3430
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 278,175 + GFF3428 0.61 +0.4 278,175 + GFF3428 0.61 -0.2 278,175 + GFF3428 0.61 +0.8 278,175 + GFF3428 0.61 -0.0 278,176 - GFF3428 0.61 +0.0 278,177 + GFF3428 0.61 -1.3 278,178 - GFF3428 0.61 -0.8 278,389 + GFF3428 0.71 -0.6 278,389 + GFF3428 0.71 +0.4 278,389 + GFF3428 0.71 +0.5 278,389 + GFF3428 0.71 -0.2 278,389 + GFF3428 0.71 +0.2 278,390 - GFF3428 0.71 +0.0 278,390 - GFF3428 0.71 +0.7 278,433 + GFF3428 0.73 -0.2 278,487 + GFF3428 0.75 +0.2 278,488 - GFF3428 0.75 -0.1 278,488 - GFF3428 0.75 -0.2 278,985 + +0.3 278,986 - +1.3 279,066 + -0.2 279,285 + GFF3429 0.20 +0.2 279,285 + GFF3429 0.20 +0.3 279,285 + GFF3429 0.20 +1.2 279,286 - GFF3429 0.20 -0.6 279,286 - GFF3429 0.20 +0.5 279,678 + GFF3429 0.56 +0.1 279,678 + GFF3429 0.56 +0.5 279,684 + GFF3429 0.56 -0.3 279,684 + GFF3429 0.56 +1.0 279,685 - GFF3429 0.56 -0.4 279,685 - GFF3429 0.56 -0.2 279,796 - GFF3429 0.66 -0.3 279,796 - GFF3429 0.66 +0.5 279,856 + GFF3429 0.72 +0.8 279,856 + GFF3429 0.72 +0.5 279,856 + GFF3429 0.72 -0.3 279,856 + GFF3429 0.72 -0.5 279,856 + GFF3429 0.72 +0.2 279,857 - GFF3429 0.72 -1.2 279,857 - GFF3429 0.72 -0.2 279,857 - GFF3429 0.72 -0.4 279,858 + GFF3429 0.72 -0.3 279,858 + GFF3429 0.72 +0.1 279,858 + GFF3429 0.72 +0.5 279,858 + GFF3429 0.72 +0.7 279,859 - GFF3429 0.72 +0.7 279,859 - GFF3429 0.72 -1.0 280,276 + -1.3 280,604 + GFF3430 0.25 -1.5 280,604 + GFF3430 0.25 -2.0 280,605 - GFF3430 0.25 -1.0 280,605 - GFF3430 0.25 +0.0 280,680 + GFF3430 0.31 -0.0 280,680 + GFF3430 0.31 +0.3 280,681 - GFF3430 0.31 -1.6 281,143 - GFF3430 0.65 -0.3
Or see this region's nucleotide sequence