Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3392 and GFF3393 are separated by 114 nucleotides GFF3393 and GFF3394 are separated by 86 nucleotides GFF3394 and GFF3395 are separated by 4 nucleotides GFF3395 and GFF3396 overlap by 17 nucleotides
GFF3392 - Adaptive-response sensory-kinase SasA, at 238,573 to 239,655
GFF3392
GFF3393 - hypothetical protein, at 239,770 to 240,261
GFF3393
GFF3394 - hypothetical protein, at 240,348 to 240,959
GFF3394
GFF3395 - putative protein, at 240,964 to 241,707
GFF3395
GFF3396 - hypothetical protein, at 241,691 to 242,353
GFF3396
Position (kb) 240
241 Strain fitness (log2 ratio) -1
0
1 at 239.856 kb on - strand, within GFF3393 at 240.142 kb on + strand, within GFF3393 at 240.142 kb on + strand, within GFF3393 at 240.357 kb on + strand at 240.663 kb on + strand, within GFF3394 at 240.663 kb on + strand, within GFF3394 at 240.664 kb on - strand, within GFF3394 at 240.664 kb on - strand, within GFF3394 at 240.922 kb on - strand at 241.027 kb on + strand at 241.028 kb on - strand at 241.130 kb on + strand, within GFF3395 at 241.130 kb on + strand, within GFF3395 at 241.130 kb on + strand, within GFF3395 at 241.130 kb on + strand, within GFF3395 at 241.130 kb on + strand, within GFF3395 at 241.131 kb on - strand, within GFF3395 at 241.131 kb on - strand, within GFF3395 at 241.131 kb on - strand, within GFF3395 at 241.461 kb on + strand, within GFF3395 at 241.561 kb on + strand, within GFF3395 at 241.562 kb on - strand, within GFF3395 at 241.562 kb on - strand, within GFF3395 at 241.620 kb on + strand, within GFF3395 at 241.621 kb on - strand, within GFF3395 at 241.943 kb on + strand, within GFF3396 at 241.944 kb on - strand, within GFF3396 at 241.944 kb on - strand, within GFF3396
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 239,856 - GFF3393 0.17 +0.5 240,142 + GFF3393 0.76 -0.1 240,142 + GFF3393 0.76 +0.3 240,357 + -0.4 240,663 + GFF3394 0.51 -0.3 240,663 + GFF3394 0.51 -0.1 240,664 - GFF3394 0.52 +0.2 240,664 - GFF3394 0.52 +0.0 240,922 - +0.2 241,027 + +0.5 241,028 - +0.1 241,130 + GFF3395 0.22 +0.5 241,130 + GFF3395 0.22 +0.2 241,130 + GFF3395 0.22 +0.7 241,130 + GFF3395 0.22 +0.3 241,130 + GFF3395 0.22 -0.8 241,131 - GFF3395 0.22 -0.3 241,131 - GFF3395 0.22 -0.2 241,131 - GFF3395 0.22 -0.2 241,461 + GFF3395 0.67 -0.1 241,561 + GFF3395 0.80 +0.2 241,562 - GFF3395 0.80 -0.4 241,562 - GFF3395 0.80 -1.2 241,620 + GFF3395 0.88 +0.0 241,621 - GFF3395 0.88 -0.2 241,943 + GFF3396 0.38 -0.2 241,944 - GFF3396 0.38 -1.1 241,944 - GFF3396 0.38 +0.6
Or see this region's nucleotide sequence