Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3381 and GFF3382 are separated by 90 nucleotides GFF3382 and GFF3383 are separated by 227 nucleotides GFF3383 and GFF3384 are separated by 278 nucleotides GFF3384 and GFF3385 are separated by 111 nucleotides
GFF3381 - hypothetical protein, at 225,963 to 226,370
GFF3381
GFF3382 - hypothetical protein, at 226,461 to 226,841
GFF3382
GFF3383 - hypothetical protein, at 227,069 to 228,871
GFF3383
GFF3384 - hypothetical protein, at 229,150 to 229,581
GFF3384
GFF3385 - Succinyl-diaminopimelate desuccinylase, at 229,693 to 231,084
GFF3385
Position (kb) 227
228
229 Strain fitness (log2 ratio) -1
0
1 at 226.363 kb on + strand at 226.364 kb on - strand at 226.537 kb on + strand, within GFF3382 at 226.538 kb on - strand, within GFF3382 at 226.715 kb on - strand, within GFF3382 at 226.715 kb on - strand, within GFF3382 at 227.239 kb on - strand at 227.239 kb on - strand at 227.301 kb on - strand, within GFF3383 at 227.301 kb on - strand, within GFF3383 at 227.513 kb on + strand, within GFF3383 at 227.766 kb on - strand, within GFF3383 at 227.954 kb on + strand, within GFF3383 at 227.954 kb on + strand, within GFF3383 at 227.955 kb on - strand, within GFF3383 at 227.955 kb on - strand, within GFF3383 at 227.955 kb on - strand, within GFF3383 at 227.955 kb on - strand, within GFF3383 at 227.955 kb on - strand, within GFF3383 at 228.143 kb on + strand, within GFF3383 at 228.144 kb on - strand, within GFF3383 at 228.310 kb on + strand, within GFF3383 at 228.311 kb on - strand, within GFF3383 at 228.311 kb on - strand, within GFF3383 at 228.473 kb on + strand, within GFF3383 at 228.473 kb on + strand, within GFF3383 at 228.474 kb on - strand, within GFF3383 at 228.474 kb on - strand, within GFF3383 at 229.194 kb on + strand, within GFF3384 at 229.195 kb on - strand, within GFF3384 at 229.195 kb on - strand, within GFF3384 at 229.523 kb on + strand, within GFF3384
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 226,363 + +0.7 226,364 - +0.9 226,537 + GFF3382 0.20 -0.3 226,538 - GFF3382 0.20 -0.3 226,715 - GFF3382 0.67 -0.1 226,715 - GFF3382 0.67 +0.4 227,239 - -0.7 227,239 - +0.1 227,301 - GFF3383 0.13 +0.0 227,301 - GFF3383 0.13 +0.4 227,513 + GFF3383 0.25 -0.2 227,766 - GFF3383 0.39 -0.4 227,954 + GFF3383 0.49 +0.1 227,954 + GFF3383 0.49 +1.2 227,955 - GFF3383 0.49 -0.1 227,955 - GFF3383 0.49 -0.2 227,955 - GFF3383 0.49 -0.1 227,955 - GFF3383 0.49 +0.4 227,955 - GFF3383 0.49 -0.2 228,143 + GFF3383 0.60 +0.4 228,144 - GFF3383 0.60 +0.2 228,310 + GFF3383 0.69 -0.6 228,311 - GFF3383 0.69 +0.5 228,311 - GFF3383 0.69 -0.1 228,473 + GFF3383 0.78 -1.0 228,473 + GFF3383 0.78 -0.1 228,474 - GFF3383 0.78 -0.9 228,474 - GFF3383 0.78 +1.3 229,194 + GFF3384 0.10 +0.6 229,195 - GFF3384 0.10 +0.7 229,195 - GFF3384 0.10 -0.2 229,523 + GFF3384 0.86 +0.1
Or see this region's nucleotide sequence