Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3370 and GFF3371 overlap by 4 nucleotides GFF3371 and GFF3372 overlap by 4 nucleotides GFF3372 and GFF3373 overlap by 4 nucleotides GFF3373 and GFF3374 overlap by 4 nucleotides
GFF3370 - Low-molecular weight cobalt-containing nitrile hydratase subunit alpha, at 215,615 to 216,238
GFF3370
GFF3371 - hypothetical protein, at 216,235 to 216,537
GFF3371
GFF3372 - hypothetical protein, at 216,534 to 216,950
GFF3372
GFF3373 - Taurine import ATP-binding protein TauB, at 216,947 to 217,798
GFF3373
GFF3374 - hypothetical protein, at 217,795 to 218,793
GFF3374
Position (kb) 216
217
218 Strain fitness (log2 ratio) -1
0
1
2 at 216.171 kb on + strand, within GFF3370 at 216.175 kb on - strand, within GFF3370 at 216.314 kb on + strand, within GFF3371 at 216.353 kb on + strand, within GFF3371 at 216.455 kb on + strand, within GFF3371 at 216.455 kb on + strand, within GFF3371 at 216.456 kb on - strand, within GFF3371 at 216.456 kb on - strand, within GFF3371 at 216.581 kb on + strand, within GFF3372 at 216.716 kb on - strand, within GFF3372 at 216.733 kb on + strand, within GFF3372 at 216.733 kb on + strand, within GFF3372 at 216.733 kb on + strand, within GFF3372 at 216.734 kb on - strand, within GFF3372 at 216.734 kb on - strand, within GFF3372 at 216.734 kb on - strand, within GFF3372 at 216.853 kb on + strand, within GFF3372 at 216.853 kb on + strand, within GFF3372 at 216.901 kb on + strand, within GFF3372 at 217.068 kb on + strand, within GFF3373 at 217.069 kb on - strand, within GFF3373 at 217.221 kb on + strand, within GFF3373 at 217.320 kb on + strand, within GFF3373 at 217.323 kb on + strand, within GFF3373 at 217.324 kb on - strand, within GFF3373 at 217.329 kb on + strand, within GFF3373 at 217.329 kb on + strand, within GFF3373 at 217.473 kb on + strand, within GFF3373 at 217.488 kb on + strand, within GFF3373 at 217.488 kb on + strand, within GFF3373 at 217.488 kb on + strand, within GFF3373 at 217.546 kb on - strand, within GFF3373 at 217.570 kb on - strand, within GFF3373 at 217.651 kb on + strand, within GFF3373 at 217.652 kb on - strand, within GFF3373 at 217.653 kb on + strand, within GFF3373 at 217.654 kb on - strand, within GFF3373 at 217.836 kb on - strand at 217.935 kb on - strand, within GFF3374 at 217.935 kb on - strand, within GFF3374 at 217.935 kb on - strand, within GFF3374 at 217.979 kb on + strand, within GFF3374 at 217.980 kb on - strand, within GFF3374 at 218.009 kb on + strand, within GFF3374 at 218.009 kb on + strand, within GFF3374 at 218.010 kb on - strand, within GFF3374 at 218.010 kb on - strand, within GFF3374 at 218.117 kb on + strand, within GFF3374 at 218.118 kb on - strand, within GFF3374 at 218.118 kb on - strand, within GFF3374 at 218.118 kb on - strand, within GFF3374 at 218.129 kb on + strand, within GFF3374 at 218.129 kb on + strand, within GFF3374 at 218.130 kb on - strand, within GFF3374 at 218.281 kb on + strand, within GFF3374 at 218.282 kb on - strand, within GFF3374 at 218.321 kb on + strand, within GFF3374 at 218.652 kb on - strand, within GFF3374 at 218.652 kb on - strand, within GFF3374 at 218.654 kb on + strand, within GFF3374 at 218.655 kb on - strand, within GFF3374
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 216,171 + GFF3370 0.89 +2.0 216,175 - GFF3370 0.90 +0.1 216,314 + GFF3371 0.26 +0.6 216,353 + GFF3371 0.39 +0.5 216,455 + GFF3371 0.73 +1.7 216,455 + GFF3371 0.73 +0.2 216,456 - GFF3371 0.73 +0.5 216,456 - GFF3371 0.73 -1.2 216,581 + GFF3372 0.11 +0.7 216,716 - GFF3372 0.44 +0.4 216,733 + GFF3372 0.48 +0.1 216,733 + GFF3372 0.48 +0.8 216,733 + GFF3372 0.48 -0.2 216,734 - GFF3372 0.48 -1.2 216,734 - GFF3372 0.48 -0.1 216,734 - GFF3372 0.48 -0.1 216,853 + GFF3372 0.76 -0.7 216,853 + GFF3372 0.76 -0.8 216,901 + GFF3372 0.88 +0.5 217,068 + GFF3373 0.14 -0.2 217,069 - GFF3373 0.14 -0.3 217,221 + GFF3373 0.32 -0.0 217,320 + GFF3373 0.44 -1.1 217,323 + GFF3373 0.44 +0.1 217,324 - GFF3373 0.44 +1.3 217,329 + GFF3373 0.45 +0.1 217,329 + GFF3373 0.45 -0.2 217,473 + GFF3373 0.62 +0.1 217,488 + GFF3373 0.63 -0.5 217,488 + GFF3373 0.63 -0.8 217,488 + GFF3373 0.63 +1.0 217,546 - GFF3373 0.70 -0.7 217,570 - GFF3373 0.73 -0.6 217,651 + GFF3373 0.83 -0.6 217,652 - GFF3373 0.83 +0.2 217,653 + GFF3373 0.83 +0.2 217,654 - GFF3373 0.83 -0.2 217,836 - -0.8 217,935 - GFF3374 0.14 +0.3 217,935 - GFF3374 0.14 +0.2 217,935 - GFF3374 0.14 +0.4 217,979 + GFF3374 0.18 -0.4 217,980 - GFF3374 0.19 -0.7 218,009 + GFF3374 0.21 -0.8 218,009 + GFF3374 0.21 +0.2 218,010 - GFF3374 0.22 -0.4 218,010 - GFF3374 0.22 -1.6 218,117 + GFF3374 0.32 +0.0 218,118 - GFF3374 0.32 +1.1 218,118 - GFF3374 0.32 +0.0 218,118 - GFF3374 0.32 +0.2 218,129 + GFF3374 0.33 +0.7 218,129 + GFF3374 0.33 -0.5 218,130 - GFF3374 0.34 -0.2 218,281 + GFF3374 0.49 -1.1 218,282 - GFF3374 0.49 +0.2 218,321 + GFF3374 0.53 -0.1 218,652 - GFF3374 0.86 +0.2 218,652 - GFF3374 0.86 -0.0 218,654 + GFF3374 0.86 +0.3 218,655 - GFF3374 0.86 -1.5
Or see this region's nucleotide sequence