Strain Fitness in Xanthobacter sp. DMC5 around GFF3363

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3361 and GFF3362 are separated by 108 nucleotidesGFF3362 and GFF3363 are separated by 85 nucleotidesGFF3363 and GFF3364 are separated by 220 nucleotides GFF3361 - Acetophenone carboxylase gamma subunit, at 205,974 to 207,191 GFF3361 GFF3362 - Acetophenone carboxylase gamma subunit, at 207,300 to 208,040 GFF3362 GFF3363 - HTH-type transcriptional regulator DmlR, at 208,126 to 209,043 GFF3363 GFF3364 - Ureidoglycolate lyase, at 209,264 to 210,109 GFF3364 Position (kb) 208 209 210Strain fitness (log2 ratio) -1 0 1at 207.127 kb on + strandat 207.127 kb on + strandat 207.127 kb on + strandat 207.127 kb on + strandat 207.127 kb on + strandat 207.128 kb on - strandat 207.128 kb on - strandat 207.128 kb on - strandat 207.128 kb on - strandat 207.128 kb on - strandat 207.232 kb on + strandat 207.284 kb on + strandat 207.301 kb on + strandat 207.340 kb on + strandat 207.340 kb on + strandat 207.340 kb on + strandat 207.340 kb on + strandat 207.340 kb on + strandat 207.340 kb on + strandat 207.341 kb on - strandat 207.341 kb on - strandat 207.341 kb on - strandat 207.341 kb on - strandat 207.395 kb on - strand, within GFF3362at 207.404 kb on + strand, within GFF3362at 207.418 kb on + strand, within GFF3362at 207.418 kb on + strand, within GFF3362at 207.419 kb on - strand, within GFF3362at 207.556 kb on + strand, within GFF3362at 207.564 kb on + strand, within GFF3362at 207.565 kb on - strand, within GFF3362at 207.565 kb on - strand, within GFF3362at 207.589 kb on - strand, within GFF3362at 208.016 kb on + strandat 208.017 kb on - strandat 208.017 kb on - strandat 208.034 kb on - strandat 208.066 kb on + strandat 208.066 kb on + strandat 208.067 kb on - strandat 208.067 kb on - strandat 208.122 kb on + strandat 208.122 kb on + strandat 208.123 kb on - strandat 208.172 kb on + strandat 208.173 kb on - strandat 208.217 kb on + strandat 208.218 kb on - strand, within GFF3363at 208.218 kb on - strand, within GFF3363at 208.218 kb on - strand, within GFF3363at 208.218 kb on - strand, within GFF3363at 208.352 kb on - strand, within GFF3363at 208.376 kb on + strand, within GFF3363at 208.533 kb on - strand, within GFF3363at 208.562 kb on + strand, within GFF3363at 208.563 kb on - strand, within GFF3363at 208.628 kb on + strand, within GFF3363at 208.629 kb on - strand, within GFF3363at 208.691 kb on + strand, within GFF3363at 208.727 kb on + strand, within GFF3363at 208.727 kb on + strand, within GFF3363at 208.727 kb on + strand, within GFF3363at 208.728 kb on - strand, within GFF3363at 208.728 kb on - strand, within GFF3363at 208.728 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.741 kb on - strand, within GFF3363at 208.742 kb on + strand, within GFF3363at 208.742 kb on + strand, within GFF3363at 208.742 kb on + strand, within GFF3363at 208.743 kb on - strand, within GFF3363at 208.817 kb on + strand, within GFF3363at 208.818 kb on - strand, within GFF3363at 209.058 kb on + strandat 209.075 kb on + strandat 209.269 kb on + strandat 209.269 kb on + strandat 209.270 kb on - strandat 209.270 kb on - strandat 209.270 kb on - strandat 209.424 kb on + strand, within GFF3364at 209.425 kb on - strand, within GFF3364at 209.436 kb on + strand, within GFF3364at 209.642 kb on + strand, within GFF3364at 209.642 kb on + strand, within GFF3364at 209.643 kb on - strand, within GFF3364at 209.872 kb on - strand, within GFF3364at 209.910 kb on + strand, within GFF3364at 209.911 kb on - strand, within GFF3364at 209.911 kb on - strand, within GFF3364at 209.997 kb on - strand, within GFF3364at 209.997 kb on - strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.011 kb on + strand, within GFF3364

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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207,127 + -0.7
207,127 + -0.1
207,127 + +0.7
207,127 + +0.1
207,127 + +0.4
207,128 - +0.3
207,128 - +0.2
207,128 - -0.3
207,128 - -0.8
207,128 - +0.3
207,232 + +0.7
207,284 + +0.4
207,301 + -0.2
207,340 + -0.1
207,340 + +0.2
207,340 + -0.6
207,340 + -0.7
207,340 + +0.2
207,340 + +0.4
207,341 - +0.1
207,341 - -0.6
207,341 - -0.5
207,341 - -0.1
207,395 - GFF3362 0.13 +1.0
207,404 + GFF3362 0.14 -0.6
207,418 + GFF3362 0.16 -0.2
207,418 + GFF3362 0.16 -0.0
207,419 - GFF3362 0.16 -0.2
207,556 + GFF3362 0.35 -0.7
207,564 + GFF3362 0.36 -1.1
207,565 - GFF3362 0.36 -0.4
207,565 - GFF3362 0.36 -0.6
207,589 - GFF3362 0.39 -0.3
208,016 + -0.8
208,017 - -0.1
208,017 - +0.6
208,034 - -1.1
208,066 + -0.4
208,066 + -0.2
208,067 - -1.3
208,067 - -0.9
208,122 + -1.3
208,122 + -0.1
208,123 - -0.5
208,172 + -0.7
208,173 - +0.0
208,217 + -0.9
208,218 - GFF3363 0.10 +0.4
208,218 - GFF3363 0.10 -0.2
208,218 - GFF3363 0.10 -0.0
208,218 - GFF3363 0.10 +0.4
208,352 - GFF3363 0.25 -0.1
208,376 + GFF3363 0.27 -0.1
208,533 - GFF3363 0.44 -0.6
208,562 + GFF3363 0.47 -0.2
208,563 - GFF3363 0.48 -0.4
208,628 + GFF3363 0.55 +0.4
208,629 - GFF3363 0.55 +0.4
208,691 + GFF3363 0.62 +0.7
208,727 + GFF3363 0.65 -0.2
208,727 + GFF3363 0.65 +0.4
208,727 + GFF3363 0.65 +0.2
208,728 - GFF3363 0.66 -0.4
208,728 - GFF3363 0.66 +0.4
208,728 - GFF3363 0.66 +0.7
208,741 - GFF3363 0.67 +1.1
208,741 - GFF3363 0.67 +1.3
208,741 - GFF3363 0.67 +0.2
208,741 - GFF3363 0.67 +1.0
208,741 - GFF3363 0.67 +0.3
208,741 - GFF3363 0.67 -0.3
208,741 - GFF3363 0.67 +1.3
208,742 + GFF3363 0.67 +0.5
208,742 + GFF3363 0.67 +0.0
208,742 + GFF3363 0.67 -0.2
208,743 - GFF3363 0.67 -0.6
208,817 + GFF3363 0.75 -1.1
208,818 - GFF3363 0.75 +0.0
209,058 + +0.3
209,075 + +0.3
209,269 + -0.4
209,269 + +0.6
209,270 - -0.4
209,270 - -0.7
209,270 - -1.3
209,424 + GFF3364 0.19 -0.6
209,425 - GFF3364 0.19 +0.2
209,436 + GFF3364 0.20 +0.7
209,642 + GFF3364 0.45 -0.1
209,642 + GFF3364 0.45 +0.0
209,643 - GFF3364 0.45 -0.6
209,872 - GFF3364 0.72 +0.8
209,910 + GFF3364 0.76 -0.1
209,911 - GFF3364 0.76 -0.4
209,911 - GFF3364 0.76 -0.0
209,997 - GFF3364 0.87 -0.5
209,997 - GFF3364 0.87 -0.8
210,011 + GFF3364 0.88 +0.5
210,011 + GFF3364 0.88 -0.6
210,011 + GFF3364 0.88 +0.5

Or see this region's nucleotide sequence