Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3343 and GFF3344 are separated by 20 nucleotides GFF3344 and GFF3345 are separated by 10 nucleotides GFF3345 and GFF3346 are separated by 155 nucleotides
GFF3343 - hypothetical protein, at 185,295 to 186,524
GFF3343
GFF3344 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 186,545 to 187,366
GFF3344
GFF3345 - 2-succinylbenzoate--CoA ligase, at 187,377 to 188,798
GFF3345
GFF3346 - Glucans biosynthesis protein G, at 188,954 to 190,465
GFF3346
Position (kb) 187
188
189 Strain fitness (log2 ratio) -1
0
1
2 at 186.393 kb on + strand, within GFF3343 at 186.393 kb on + strand, within GFF3343 at 186.394 kb on - strand, within GFF3343 at 186.394 kb on - strand, within GFF3343 at 186.566 kb on + strand at 187.691 kb on + strand, within GFF3345 at 187.828 kb on + strand, within GFF3345 at 188.166 kb on + strand, within GFF3345 at 188.166 kb on + strand, within GFF3345 at 188.166 kb on + strand, within GFF3345 at 188.167 kb on - strand, within GFF3345 at 188.167 kb on - strand, within GFF3345 at 188.167 kb on - strand, within GFF3345 at 188.167 kb on - strand, within GFF3345 at 188.361 kb on + strand, within GFF3345 at 188.362 kb on - strand, within GFF3345 at 188.703 kb on + strand at 188.705 kb on + strand at 188.705 kb on + strand at 188.705 kb on + strand at 188.706 kb on - strand at 189.030 kb on - strand at 189.073 kb on + strand at 189.074 kb on - strand at 189.149 kb on + strand, within GFF3346 at 189.150 kb on - strand, within GFF3346 at 189.158 kb on + strand, within GFF3346 at 189.219 kb on - strand, within GFF3346 at 189.305 kb on + strand, within GFF3346 at 189.305 kb on + strand, within GFF3346 at 189.305 kb on + strand, within GFF3346 at 189.305 kb on + strand, within GFF3346 at 189.305 kb on + strand, within GFF3346 at 189.306 kb on - strand, within GFF3346 at 189.306 kb on - strand, within GFF3346 at 189.306 kb on - strand, within GFF3346 at 189.306 kb on - strand, within GFF3346 at 189.306 kb on - strand, within GFF3346 at 189.306 kb on - strand, within GFF3346 at 189.414 kb on - strand, within GFF3346 at 189.450 kb on - strand, within GFF3346 at 189.450 kb on - strand, within GFF3346 at 189.557 kb on + strand, within GFF3346 at 189.557 kb on + strand, within GFF3346 at 189.557 kb on + strand, within GFF3346 at 189.557 kb on + strand, within GFF3346 at 189.558 kb on - strand, within GFF3346 at 189.558 kb on - strand, within GFF3346 at 189.558 kb on - strand, within GFF3346 at 189.558 kb on - strand, within GFF3346 at 189.558 kb on - strand, within GFF3346 at 189.558 kb on - strand, within GFF3346 at 189.692 kb on + strand, within GFF3346
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 186,393 + GFF3343 0.89 -1.7 186,393 + GFF3343 0.89 +0.1 186,394 - GFF3343 0.89 +0.6 186,394 - GFF3343 0.89 -0.1 186,566 + -0.1 187,691 + GFF3345 0.22 +0.5 187,828 + GFF3345 0.32 -0.5 188,166 + GFF3345 0.55 +0.4 188,166 + GFF3345 0.55 -0.6 188,166 + GFF3345 0.55 +0.1 188,167 - GFF3345 0.56 +0.5 188,167 - GFF3345 0.56 -0.8 188,167 - GFF3345 0.56 -0.5 188,167 - GFF3345 0.56 +0.3 188,361 + GFF3345 0.69 -0.5 188,362 - GFF3345 0.69 -1.5 188,703 + +0.5 188,705 + +0.1 188,705 + +0.0 188,705 + -0.5 188,706 - -0.1 189,030 - -0.3 189,073 + -0.6 189,074 - +0.7 189,149 + GFF3346 0.13 -0.5 189,150 - GFF3346 0.13 -0.2 189,158 + GFF3346 0.13 +0.3 189,219 - GFF3346 0.18 -0.8 189,305 + GFF3346 0.23 -0.0 189,305 + GFF3346 0.23 -0.4 189,305 + GFF3346 0.23 -0.1 189,305 + GFF3346 0.23 +0.5 189,305 + GFF3346 0.23 +0.9 189,306 - GFF3346 0.23 -0.8 189,306 - GFF3346 0.23 +0.0 189,306 - GFF3346 0.23 -0.5 189,306 - GFF3346 0.23 +0.3 189,306 - GFF3346 0.23 -0.1 189,306 - GFF3346 0.23 +0.3 189,414 - GFF3346 0.30 +0.2 189,450 - GFF3346 0.33 +0.4 189,450 - GFF3346 0.33 +0.2 189,557 + GFF3346 0.40 +0.0 189,557 + GFF3346 0.40 -1.2 189,557 + GFF3346 0.40 +1.8 189,557 + GFF3346 0.40 -1.3 189,558 - GFF3346 0.40 +0.7 189,558 - GFF3346 0.40 -0.2 189,558 - GFF3346 0.40 -0.7 189,558 - GFF3346 0.40 +0.8 189,558 - GFF3346 0.40 -0.1 189,558 - GFF3346 0.40 -1.2 189,692 + GFF3346 0.49 +0.2
Or see this region's nucleotide sequence