Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3213 and GFF3214 are separated by 43 nucleotides GFF3214 and GFF3215 are separated by 159 nucleotides GFF3215 and GFF3216 are separated by 175 nucleotides
GFF3213 - FAD:protein FMN transferase, at 38,157 to 39,059
GFF3213
GFF3214 - Dihydroanticapsin 7-dehydrogenase, at 39,103 to 39,858
GFF3214
GFF3215 - Riboflavin transporter RibZ, at 40,018 to 41,529
GFF3215
GFF3216 - hypothetical protein, at 41,705 to 43,099
GFF3216
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1 at 39.019 kb on + strand at 39.393 kb on - strand, within GFF3214 at 39.440 kb on - strand, within GFF3214 at 39.826 kb on + strand at 39.826 kb on + strand at 39.827 kb on - strand at 39.827 kb on - strand at 39.910 kb on + strand at 40.336 kb on + strand, within GFF3215 at 40.337 kb on - strand, within GFF3215 at 40.337 kb on - strand, within GFF3215 at 40.355 kb on - strand, within GFF3215 at 40.355 kb on - strand, within GFF3215 at 40.355 kb on - strand, within GFF3215 at 40.355 kb on - strand, within GFF3215 at 40.355 kb on - strand, within GFF3215 at 40.366 kb on + strand, within GFF3215 at 40.367 kb on - strand, within GFF3215 at 40.965 kb on + strand, within GFF3215 at 40.965 kb on + strand, within GFF3215 at 40.966 kb on - strand, within GFF3215 at 40.966 kb on - strand, within GFF3215 at 40.966 kb on - strand, within GFF3215 at 41.528 kb on - strand at 41.591 kb on - strand at 41.769 kb on + strand at 41.769 kb on + strand at 41.770 kb on - strand at 41.770 kb on - strand at 41.770 kb on - strand at 41.770 kb on - strand at 41.925 kb on + strand, within GFF3216 at 41.925 kb on + strand, within GFF3216 at 42.317 kb on + strand, within GFF3216 at 42.318 kb on - strand, within GFF3216
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 39,019 + +0.4 39,393 - GFF3214 0.38 -0.5 39,440 - GFF3214 0.45 -0.6 39,826 + +0.3 39,826 + -0.6 39,827 - -0.2 39,827 - +0.2 39,910 + -1.2 40,336 + GFF3215 0.21 +0.2 40,337 - GFF3215 0.21 -0.8 40,337 - GFF3215 0.21 +0.4 40,355 - GFF3215 0.22 +0.1 40,355 - GFF3215 0.22 -0.4 40,355 - GFF3215 0.22 -0.1 40,355 - GFF3215 0.22 +0.0 40,355 - GFF3215 0.22 +0.3 40,366 + GFF3215 0.23 +0.4 40,367 - GFF3215 0.23 -0.3 40,965 + GFF3215 0.63 +0.1 40,965 + GFF3215 0.63 +0.2 40,966 - GFF3215 0.63 +0.6 40,966 - GFF3215 0.63 +0.1 40,966 - GFF3215 0.63 -0.1 41,528 - +0.1 41,591 - -0.5 41,769 + +0.4 41,769 + +0.4 41,770 - +0.0 41,770 - -0.3 41,770 - -0.3 41,770 - -0.1 41,925 + GFF3216 0.16 +0.2 41,925 + GFF3216 0.16 +0.1 42,317 + GFF3216 0.44 -2.3 42,318 - GFF3216 0.44 +0.9
Or see this region's nucleotide sequence