Strain Fitness in Xanthobacter sp. DMC5 around GFF321

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF319 and GFF320 are separated by 58 nucleotidesGFF320 and GFF321 are separated by 1 nucleotidesGFF321 and GFF322 are separated by 1 nucleotidesGFF322 and GFF323 overlap by 4 nucleotidesGFF323 and GFF324 overlap by 4 nucleotides GFF319 - hypothetical protein, at 329,804 to 331,096 GFF319 GFF320 - hypothetical protein, at 331,155 to 331,337 GFF320 GFF321 - hypothetical protein, at 331,339 to 331,929 GFF321 GFF322 - hypothetical protein, at 331,931 to 332,419 GFF322 GFF323 - hypothetical protein, at 332,416 to 332,757 GFF323 GFF324 - hypothetical protein, at 332,754 to 332,975 GFF324 Position (kb) 331 332Strain fitness (log2 ratio) -1 0 1 2at 330.356 kb on + strand, within GFF319at 330.461 kb on + strand, within GFF319at 330.461 kb on + strand, within GFF319at 330.462 kb on - strand, within GFF319at 330.462 kb on - strand, within GFF319at 330.462 kb on - strand, within GFF319at 330.602 kb on + strand, within GFF319at 330.602 kb on + strand, within GFF319at 330.617 kb on + strand, within GFF319at 330.618 kb on - strand, within GFF319at 330.618 kb on - strand, within GFF319at 330.618 kb on - strand, within GFF319at 330.618 kb on - strand, within GFF319at 330.725 kb on + strand, within GFF319at 330.725 kb on + strand, within GFF319at 330.726 kb on - strand, within GFF319at 330.726 kb on - strand, within GFF319at 330.726 kb on - strand, within GFF319at 330.726 kb on - strand, within GFF319at 330.726 kb on - strand, within GFF319at 330.764 kb on + strand, within GFF319at 330.764 kb on + strand, within GFF319at 330.764 kb on + strand, within GFF319at 330.764 kb on + strand, within GFF319at 330.764 kb on + strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.765 kb on - strand, within GFF319at 330.821 kb on + strand, within GFF319at 330.821 kb on + strand, within GFF319at 330.822 kb on - strand, within GFF319at 330.822 kb on - strand, within GFF319at 330.822 kb on - strand, within GFF319at 330.840 kb on - strand, within GFF319at 330.840 kb on - strand, within GFF319at 330.933 kb on - strand, within GFF319at 330.933 kb on - strand, within GFF319at 330.933 kb on - strand, within GFF319at 330.953 kb on + strand, within GFF319at 330.953 kb on + strand, within GFF319at 330.953 kb on + strand, within GFF319at 330.954 kb on - strand, within GFF319at 330.954 kb on - strand, within GFF319at 330.954 kb on - strand, within GFF319at 331.013 kb on + strandat 331.013 kb on + strandat 331.013 kb on + strandat 331.013 kb on + strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.025 kb on + strandat 331.025 kb on + strandat 331.272 kb on - strand, within GFF320at 331.483 kb on + strand, within GFF321at 331.606 kb on + strand, within GFF321at 331.606 kb on + strand, within GFF321at 331.606 kb on + strand, within GFF321at 331.606 kb on + strand, within GFF321at 331.606 kb on + strand, within GFF321at 331.607 kb on - strand, within GFF321at 331.607 kb on - strand, within GFF321at 331.607 kb on - strand, within GFF321at 331.651 kb on + strand, within GFF321at 331.651 kb on + strand, within GFF321at 331.651 kb on + strand, within GFF321at 331.651 kb on + strand, within GFF321at 331.684 kb on + strand, within GFF321at 331.685 kb on - strand, within GFF321at 331.685 kb on - strand, within GFF321at 331.700 kb on - strand, within GFF321at 331.700 kb on - strand, within GFF321at 331.701 kb on + strand, within GFF321at 331.723 kb on + strand, within GFF321at 331.723 kb on + strand, within GFF321at 331.723 kb on + strand, within GFF321at 331.724 kb on - strand, within GFF321at 331.765 kb on + strand, within GFF321at 331.765 kb on + strand, within GFF321at 331.766 kb on - strand, within GFF321at 331.766 kb on - strand, within GFF321at 331.766 kb on - strand, within GFF321at 331.766 kb on - strand, within GFF321at 331.832 kb on - strand, within GFF321at 331.832 kb on - strand, within GFF321at 331.927 kb on + strandat 331.928 kb on - strandat 331.928 kb on - strandat 331.928 kb on - strandat 331.995 kb on + strand, within GFF322at 331.996 kb on - strand, within GFF322at 332.096 kb on - strand, within GFF322at 332.133 kb on - strand, within GFF322at 332.176 kb on - strand, within GFF322at 332.176 kb on - strand, within GFF322at 332.194 kb on + strand, within GFF322at 332.195 kb on - strand, within GFF322at 332.269 kb on + strand, within GFF322at 332.270 kb on - strand, within GFF322at 332.270 kb on - strand, within GFF322at 332.270 kb on - strand, within GFF322at 332.554 kb on + strand, within GFF323at 332.554 kb on + strand, within GFF323at 332.554 kb on + strand, within GFF323at 332.554 kb on + strand, within GFF323at 332.555 kb on - strand, within GFF323at 332.555 kb on - strand, within GFF323at 332.633 kb on - strand, within GFF323at 332.769 kb on + strandat 332.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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330,356 + GFF319 0.43 +0.4
330,461 + GFF319 0.51 +1.7
330,461 + GFF319 0.51 -0.3
330,462 - GFF319 0.51 +0.1
330,462 - GFF319 0.51 +0.1
330,462 - GFF319 0.51 +0.1
330,602 + GFF319 0.62 -0.2
330,602 + GFF319 0.62 -0.5
330,617 + GFF319 0.63 -0.4
330,618 - GFF319 0.63 +0.5
330,618 - GFF319 0.63 +0.4
330,618 - GFF319 0.63 -0.7
330,618 - GFF319 0.63 +0.7
330,725 + GFF319 0.71 -0.9
330,725 + GFF319 0.71 -0.4
330,726 - GFF319 0.71 +0.9
330,726 - GFF319 0.71 +0.1
330,726 - GFF319 0.71 +0.4
330,726 - GFF319 0.71 +0.3
330,726 - GFF319 0.71 -0.2
330,764 + GFF319 0.74 -0.5
330,764 + GFF319 0.74 -0.0
330,764 + GFF319 0.74 +1.2
330,764 + GFF319 0.74 +0.1
330,764 + GFF319 0.74 -0.0
330,765 - GFF319 0.74 -0.0
330,765 - GFF319 0.74 +0.1
330,765 - GFF319 0.74 -0.3
330,765 - GFF319 0.74 +0.7
330,765 - GFF319 0.74 +0.4
330,765 - GFF319 0.74 -0.1
330,821 + GFF319 0.79 -0.2
330,821 + GFF319 0.79 +0.3
330,822 - GFF319 0.79 +0.2
330,822 - GFF319 0.79 +0.8
330,822 - GFF319 0.79 -0.2
330,840 - GFF319 0.80 -0.3
330,840 - GFF319 0.80 -0.2
330,933 - GFF319 0.87 +1.1
330,933 - GFF319 0.87 +1.1
330,933 - GFF319 0.87 -0.7
330,953 + GFF319 0.89 -1.2
330,953 + GFF319 0.89 +0.5
330,953 + GFF319 0.89 +0.6
330,954 - GFF319 0.89 -0.2
330,954 - GFF319 0.89 -0.0
330,954 - GFF319 0.89 +0.1
331,013 + -0.0
331,013 + -0.4
331,013 + -1.5
331,013 + -0.6
331,014 - -0.2
331,014 - -0.9
331,014 - +0.1
331,014 - -0.0
331,014 - +1.0
331,014 - -0.6
331,025 + -0.0
331,025 + +0.3
331,272 - GFF320 0.64 -0.9
331,483 + GFF321 0.24 -0.3
331,606 + GFF321 0.45 +1.1
331,606 + GFF321 0.45 -1.0
331,606 + GFF321 0.45 -0.4
331,606 + GFF321 0.45 +0.1
331,606 + GFF321 0.45 -0.1
331,607 - GFF321 0.45 -0.6
331,607 - GFF321 0.45 +0.2
331,607 - GFF321 0.45 +0.3
331,651 + GFF321 0.53 -0.7
331,651 + GFF321 0.53 +0.2
331,651 + GFF321 0.53 +0.2
331,651 + GFF321 0.53 +0.2
331,684 + GFF321 0.58 -0.4
331,685 - GFF321 0.59 +0.0
331,685 - GFF321 0.59 -0.4
331,700 - GFF321 0.61 -0.2
331,700 - GFF321 0.61 +0.5
331,701 + GFF321 0.61 -0.4
331,723 + GFF321 0.65 -0.5
331,723 + GFF321 0.65 -0.9
331,723 + GFF321 0.65 -0.7
331,724 - GFF321 0.65 -0.0
331,765 + GFF321 0.72 +0.8
331,765 + GFF321 0.72 -0.4
331,766 - GFF321 0.72 +0.2
331,766 - GFF321 0.72 -1.4
331,766 - GFF321 0.72 -0.6
331,766 - GFF321 0.72 +0.1
331,832 - GFF321 0.83 -0.0
331,832 - GFF321 0.83 -0.0
331,927 + +0.7
331,928 - +0.2
331,928 - +0.6
331,928 - +0.5
331,995 + GFF322 0.13 -0.1
331,996 - GFF322 0.13 -0.6
332,096 - GFF322 0.34 +1.0
332,133 - GFF322 0.41 -0.6
332,176 - GFF322 0.50 -0.2
332,176 - GFF322 0.50 +0.0
332,194 + GFF322 0.54 +1.0
332,195 - GFF322 0.54 +0.4
332,269 + GFF322 0.69 +1.1
332,270 - GFF322 0.69 -0.4
332,270 - GFF322 0.69 -0.1
332,270 - GFF322 0.69 -0.3
332,554 + GFF323 0.40 +0.2
332,554 + GFF323 0.40 -0.9
332,554 + GFF323 0.40 -0.7
332,554 + GFF323 0.40 +1.8
332,555 - GFF323 0.41 +0.9
332,555 - GFF323 0.41 -0.6
332,633 - GFF323 0.63 -0.5
332,769 + +0.2
332,770 - -1.0

Or see this region's nucleotide sequence