Strain Fitness in Xanthobacter sp. DMC5 around GFF317

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF316 and GFF317 are separated by 7 nucleotidesGFF317 and GFF318 overlap by 17 nucleotidesGFF318 and GFF319 are separated by 11 nucleotides GFF316 - hypothetical protein, at 325,921 to 327,636 GFF316 GFF317 - hypothetical protein, at 327,644 to 328,879 GFF317 GFF318 - ATP-dependent Clp protease proteolytic subunit, at 328,863 to 329,792 GFF318 GFF319 - hypothetical protein, at 329,804 to 331,096 GFF319 Position (kb) 327 328 329Strain fitness (log2 ratio) -2 -1 0 1at 326.653 kb on + strand, within GFF316at 326.653 kb on + strand, within GFF316at 326.653 kb on + strand, within GFF316at 326.654 kb on - strand, within GFF316at 326.654 kb on - strand, within GFF316at 326.713 kb on + strand, within GFF316at 326.982 kb on + strand, within GFF316at 326.982 kb on + strand, within GFF316at 326.982 kb on + strand, within GFF316at 327.072 kb on + strand, within GFF316at 327.073 kb on - strand, within GFF316at 327.073 kb on - strand, within GFF316at 327.373 kb on + strand, within GFF316at 327.373 kb on + strand, within GFF316at 327.373 kb on + strand, within GFF316at 327.373 kb on + strand, within GFF316at 327.374 kb on - strand, within GFF316at 327.374 kb on - strand, within GFF316at 327.502 kb on + strandat 327.503 kb on - strandat 327.503 kb on - strandat 327.553 kb on + strandat 327.607 kb on + strandat 327.608 kb on - strandat 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.106 kb on + strand, within GFF317at 328.107 kb on - strand, within GFF317at 328.107 kb on - strand, within GFF317at 328.107 kb on - strand, within GFF317at 328.112 kb on + strand, within GFF317at 328.113 kb on - strand, within GFF317at 328.157 kb on - strand, within GFF317at 328.178 kb on - strand, within GFF317at 328.230 kb on + strand, within GFF317at 328.230 kb on + strand, within GFF317at 328.231 kb on - strand, within GFF317at 328.231 kb on - strand, within GFF317at 328.231 kb on - strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.334 kb on + strand, within GFF317at 328.335 kb on - strand, within GFF317at 328.335 kb on - strand, within GFF317at 328.418 kb on + strand, within GFF317at 328.418 kb on + strand, within GFF317at 328.418 kb on + strand, within GFF317at 328.419 kb on - strand, within GFF317at 328.419 kb on - strand, within GFF317at 328.419 kb on - strand, within GFF317at 328.461 kb on - strand, within GFF317at 328.583 kb on + strand, within GFF317at 328.583 kb on + strand, within GFF317at 328.583 kb on + strand, within GFF317at 328.877 kb on + strandat 328.877 kb on + strandat 328.877 kb on + strandat 329.226 kb on + strand, within GFF318at 329.226 kb on + strand, within GFF318at 329.226 kb on + strand, within GFF318at 329.227 kb on - strand, within GFF318at 329.227 kb on - strand, within GFF318at 329.227 kb on - strand, within GFF318at 329.227 kb on - strand, within GFF318at 329.448 kb on + strand, within GFF318at 329.449 kb on - strand, within GFF318at 329.508 kb on + strand, within GFF318at 329.508 kb on + strand, within GFF318at 329.508 kb on + strand, within GFF318at 329.508 kb on + strand, within GFF318at 329.509 kb on - strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.510 kb on + strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.511 kb on - strand, within GFF318at 329.511 kb on - strand, within GFF318

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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326,653 + GFF316 0.43 +0.5
326,653 + GFF316 0.43 +1.1
326,653 + GFF316 0.43 -0.6
326,654 - GFF316 0.43 -0.5
326,654 - GFF316 0.43 +1.0
326,713 + GFF316 0.46 +0.6
326,982 + GFF316 0.62 -0.2
326,982 + GFF316 0.62 +0.3
326,982 + GFF316 0.62 -0.2
327,072 + GFF316 0.67 -0.2
327,073 - GFF316 0.67 -0.1
327,073 - GFF316 0.67 -0.3
327,373 + GFF316 0.85 +0.3
327,373 + GFF316 0.85 -0.2
327,373 + GFF316 0.85 -0.6
327,373 + GFF316 0.85 -0.4
327,374 - GFF316 0.85 +0.5
327,374 - GFF316 0.85 -0.5
327,502 + +1.4
327,503 - +0.5
327,503 - -0.1
327,553 + +0.6
327,607 + +0.2
327,608 - -0.4
328,106 + GFF317 0.37 +0.4
328,106 + GFF317 0.37 -0.3
328,106 + GFF317 0.37 +0.1
328,106 + GFF317 0.37 +0.2
328,106 + GFF317 0.37 -0.3
328,107 - GFF317 0.37 -0.4
328,107 - GFF317 0.37 -0.2
328,107 - GFF317 0.37 +0.3
328,112 + GFF317 0.38 +1.0
328,113 - GFF317 0.38 +0.2
328,157 - GFF317 0.42 +1.2
328,178 - GFF317 0.43 +0.3
328,230 + GFF317 0.47 +1.4
328,230 + GFF317 0.47 +0.5
328,231 - GFF317 0.47 +0.6
328,231 - GFF317 0.47 -0.4
328,231 - GFF317 0.47 +0.2
328,334 + GFF317 0.56 +0.6
328,334 + GFF317 0.56 +0.7
328,334 + GFF317 0.56 +0.5
328,334 + GFF317 0.56 +0.3
328,335 - GFF317 0.56 +0.2
328,335 - GFF317 0.56 -0.9
328,418 + GFF317 0.63 +0.4
328,418 + GFF317 0.63 +0.2
328,418 + GFF317 0.63 -0.4
328,419 - GFF317 0.63 -0.6
328,419 - GFF317 0.63 -0.5
328,419 - GFF317 0.63 -0.7
328,461 - GFF317 0.66 +0.4
328,583 + GFF317 0.76 +0.1
328,583 + GFF317 0.76 -1.0
328,583 + GFF317 0.76 +0.3
328,877 + +0.1
328,877 + -0.6
328,877 + +0.4
329,226 + GFF318 0.39 -0.2
329,226 + GFF318 0.39 -0.5
329,226 + GFF318 0.39 +0.1
329,227 - GFF318 0.39 -0.0
329,227 - GFF318 0.39 +0.2
329,227 - GFF318 0.39 -0.2
329,227 - GFF318 0.39 -0.2
329,448 + GFF318 0.63 -0.5
329,449 - GFF318 0.63 +0.3
329,508 + GFF318 0.69 -1.0
329,508 + GFF318 0.69 -1.9
329,508 + GFF318 0.69 -0.7
329,508 + GFF318 0.69 -0.1
329,509 - GFF318 0.69 -0.6
329,510 + GFF318 0.70 +0.2
329,510 + GFF318 0.70 -0.3
329,510 + GFF318 0.70 -0.7
329,510 + GFF318 0.70 +1.4
329,510 + GFF318 0.70 +0.2
329,510 + GFF318 0.70 -1.6
329,511 - GFF318 0.70 +0.7
329,511 - GFF318 0.70 +0.3
329,511 - GFF318 0.70 +0.4
329,511 - GFF318 0.70 -0.5
329,511 - GFF318 0.70 +0.1
329,511 - GFF318 0.70 -0.9

Or see this region's nucleotide sequence