Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3144 and GFF3145 overlap by 4 nucleotides GFF3145 and GFF3146 overlap by 4 nucleotides GFF3146 and GFF3147 are separated by 10 nucleotides
GFF3144 - N-(2-amino-2-carboxyethyl)-L-glutamate synthase, at 880,158 to 881,240
GFF3144
GFF3145 - Long-chain-fatty-acid--CoA ligase, at 881,237 to 882,763
GFF3145
GFF3146 - hypothetical protein, at 882,760 to 883,542
GFF3146
GFF3147 - hypothetical protein, at 883,553 to 883,972
GFF3147
Position (kb) 881
882
883 Strain fitness (log2 ratio) -1
0
1 at 880.244 kb on - strand at 880.244 kb on - strand at 880.547 kb on - strand, within GFF3144 at 880.547 kb on - strand, within GFF3144 at 880.780 kb on + strand, within GFF3144 at 880.946 kb on - strand, within GFF3144 at 880.946 kb on - strand, within GFF3144 at 881.026 kb on + strand, within GFF3144 at 881.095 kb on + strand, within GFF3144 at 881.095 kb on + strand, within GFF3144 at 881.096 kb on - strand, within GFF3144 at 881.361 kb on + strand at 881.362 kb on - strand at 881.461 kb on + strand, within GFF3145 at 881.589 kb on + strand, within GFF3145 at 881.589 kb on + strand, within GFF3145 at 881.589 kb on + strand, within GFF3145 at 881.589 kb on + strand, within GFF3145 at 881.590 kb on - strand, within GFF3145 at 881.590 kb on - strand, within GFF3145 at 881.593 kb on - strand, within GFF3145 at 881.595 kb on - strand, within GFF3145 at 881.634 kb on + strand, within GFF3145 at 881.635 kb on - strand, within GFF3145 at 881.775 kb on + strand, within GFF3145 at 881.776 kb on - strand, within GFF3145 at 881.853 kb on + strand, within GFF3145 at 881.853 kb on + strand, within GFF3145 at 882.056 kb on - strand, within GFF3145 at 882.057 kb on + strand, within GFF3145 at 882.057 kb on + strand, within GFF3145 at 882.058 kb on - strand, within GFF3145 at 882.144 kb on + strand, within GFF3145 at 882.273 kb on + strand, within GFF3145 at 882.274 kb on - strand, within GFF3145 at 882.432 kb on + strand, within GFF3145 at 882.432 kb on + strand, within GFF3145 at 882.433 kb on - strand, within GFF3145 at 882.433 kb on - strand, within GFF3145 at 882.552 kb on + strand, within GFF3145 at 882.552 kb on + strand, within GFF3145 at 882.552 kb on + strand, within GFF3145 at 882.552 kb on + strand, within GFF3145 at 882.552 kb on + strand, within GFF3145 at 882.553 kb on - strand, within GFF3145 at 882.553 kb on - strand, within GFF3145 at 882.553 kb on - strand, within GFF3145 at 883.082 kb on + strand, within GFF3146 at 883.126 kb on + strand, within GFF3146 at 883.127 kb on - strand, within GFF3146 at 883.142 kb on + strand, within GFF3146 at 883.143 kb on - strand, within GFF3146 at 883.203 kb on - strand, within GFF3146 at 883.203 kb on - strand, within GFF3146 at 883.394 kb on + strand, within GFF3146 at 883.575 kb on + strand at 883.576 kb on - strand at 883.576 kb on - strand at 883.576 kb on - strand at 883.707 kb on + strand, within GFF3147 at 883.707 kb on + strand, within GFF3147
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 880,244 - -0.4 880,244 - +0.4 880,547 - GFF3144 0.36 -0.3 880,547 - GFF3144 0.36 -0.7 880,780 + GFF3144 0.57 -0.3 880,946 - GFF3144 0.73 -0.3 880,946 - GFF3144 0.73 +0.2 881,026 + GFF3144 0.80 -0.9 881,095 + GFF3144 0.87 -0.3 881,095 + GFF3144 0.87 +0.3 881,096 - GFF3144 0.87 +0.7 881,361 + -0.2 881,362 - -1.3 881,461 + GFF3145 0.15 -0.2 881,589 + GFF3145 0.23 -0.7 881,589 + GFF3145 0.23 +0.4 881,589 + GFF3145 0.23 +0.6 881,589 + GFF3145 0.23 +0.7 881,590 - GFF3145 0.23 -1.0 881,590 - GFF3145 0.23 +0.5 881,593 - GFF3145 0.23 +0.1 881,595 - GFF3145 0.23 -0.5 881,634 + GFF3145 0.26 -0.1 881,635 - GFF3145 0.26 +0.9 881,775 + GFF3145 0.35 -0.3 881,776 - GFF3145 0.35 +0.5 881,853 + GFF3145 0.40 -0.3 881,853 + GFF3145 0.40 -0.5 882,056 - GFF3145 0.54 -0.1 882,057 + GFF3145 0.54 +1.1 882,057 + GFF3145 0.54 +0.8 882,058 - GFF3145 0.54 +0.0 882,144 + GFF3145 0.59 +0.4 882,273 + GFF3145 0.68 -1.4 882,274 - GFF3145 0.68 -0.2 882,432 + GFF3145 0.78 -0.8 882,432 + GFF3145 0.78 +0.2 882,433 - GFF3145 0.78 -0.3 882,433 - GFF3145 0.78 -0.4 882,552 + GFF3145 0.86 +0.5 882,552 + GFF3145 0.86 +1.4 882,552 + GFF3145 0.86 +0.5 882,552 + GFF3145 0.86 -0.3 882,552 + GFF3145 0.86 +0.6 882,553 - GFF3145 0.86 +0.0 882,553 - GFF3145 0.86 -0.6 882,553 - GFF3145 0.86 +0.7 883,082 + GFF3146 0.41 +0.1 883,126 + GFF3146 0.47 -0.2 883,127 - GFF3146 0.47 +0.8 883,142 + GFF3146 0.49 +0.4 883,143 - GFF3146 0.49 +0.2 883,203 - GFF3146 0.57 +0.7 883,203 - GFF3146 0.57 +0.9 883,394 + GFF3146 0.81 -0.8 883,575 + +1.1 883,576 - +0.9 883,576 - +0.3 883,576 - +0.2 883,707 + GFF3147 0.37 -0.4 883,707 + GFF3147 0.37 +0.2
Or see this region's nucleotide sequence