Strain Fitness in Xanthobacter sp. DMC5 around GFF3120

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3118 and GFF3119 are separated by 140 nucleotidesGFF3119 and GFF3120 overlap by 104 nucleotidesGFF3120 and GFF3121 are separated by 123 nucleotides GFF3118 - hypothetical protein, at 847,016 to 847,693 GFF3118 GFF3119 - hypothetical protein, at 847,834 to 848,316 GFF3119 GFF3120 - Polyamine aminopropyltransferase, at 848,213 to 850,858 GFF3120 GFF3121 - hypothetical protein, at 850,982 to 852,916 GFF3121 Position (kb) 848 849 850 851Strain fitness (log2 ratio) -2 -1 0 1 2at 847.241 kb on - strand, within GFF3118at 847.416 kb on - strand, within GFF3118at 847.416 kb on - strand, within GFF3118at 847.583 kb on + strand, within GFF3118at 847.584 kb on - strand, within GFF3118at 847.663 kb on + strandat 847.664 kb on - strandat 848.116 kb on + strand, within GFF3119at 848.116 kb on + strand, within GFF3119at 848.116 kb on + strand, within GFF3119at 848.116 kb on + strand, within GFF3119at 848.117 kb on - strand, within GFF3119at 848.117 kb on - strand, within GFF3119at 848.117 kb on - strand, within GFF3119at 848.225 kb on + strandat 848.226 kb on - strandat 848.285 kb on + strandat 848.285 kb on + strandat 848.286 kb on - strandat 848.353 kb on - strandat 848.464 kb on + strandat 848.465 kb on - strandat 848.466 kb on + strandat 848.467 kb on - strandat 848.467 kb on - strandat 848.488 kb on - strand, within GFF3120at 849.048 kb on + strand, within GFF3120at 849.048 kb on + strand, within GFF3120at 849.048 kb on + strand, within GFF3120at 849.049 kb on - strand, within GFF3120at 849.049 kb on - strand, within GFF3120at 849.049 kb on - strand, within GFF3120at 849.072 kb on + strand, within GFF3120at 849.169 kb on - strand, within GFF3120at 849.579 kb on + strand, within GFF3120at 849.579 kb on + strand, within GFF3120at 849.580 kb on - strand, within GFF3120at 849.580 kb on - strand, within GFF3120at 849.607 kb on - strand, within GFF3120at 849.607 kb on - strand, within GFF3120at 849.607 kb on - strand, within GFF3120at 849.673 kb on + strand, within GFF3120at 849.673 kb on + strand, within GFF3120at 849.674 kb on - strand, within GFF3120at 849.970 kb on - strand, within GFF3120at 850.002 kb on + strand, within GFF3120at 850.029 kb on + strand, within GFF3120at 850.029 kb on + strand, within GFF3120at 850.029 kb on + strand, within GFF3120at 850.030 kb on - strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.332 kb on + strand, within GFF3120at 850.333 kb on - strand, within GFF3120at 850.333 kb on - strand, within GFF3120at 850.333 kb on - strand, within GFF3120at 850.377 kb on - strand, within GFF3120at 850.578 kb on + strand, within GFF3120at 850.732 kb on - strandat 850.805 kb on + strandat 851.104 kb on - strandat 851.280 kb on + strand, within GFF3121at 851.280 kb on + strand, within GFF3121at 851.280 kb on + strand, within GFF3121at 851.280 kb on + strand, within GFF3121at 851.281 kb on - strand, within GFF3121at 851.281 kb on - strand, within GFF3121at 851.400 kb on + strand, within GFF3121at 851.400 kb on + strand, within GFF3121at 851.400 kb on + strand, within GFF3121at 851.401 kb on - strand, within GFF3121at 851.401 kb on - strand, within GFF3121at 851.526 kb on + strand, within GFF3121at 851.526 kb on + strand, within GFF3121at 851.526 kb on + strand, within GFF3121at 851.649 kb on + strand, within GFF3121at 851.649 kb on + strand, within GFF3121at 851.649 kb on + strand, within GFF3121at 851.650 kb on - strand, within GFF3121at 851.650 kb on - strand, within GFF3121at 851.650 kb on - strand, within GFF3121at 851.689 kb on - strand, within GFF3121at 851.689 kb on - strand, within GFF3121at 851.689 kb on - strand, within GFF3121at 851.763 kb on + strand, within GFF3121at 851.764 kb on - strand, within GFF3121at 851.764 kb on - strand, within GFF3121at 851.764 kb on - strand, within GFF3121at 851.788 kb on - strand, within GFF3121at 851.814 kb on + strand, within GFF3121at 851.815 kb on - strand, within GFF3121

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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847,241 - GFF3118 0.33 +0.2
847,416 - GFF3118 0.59 -0.3
847,416 - GFF3118 0.59 +1.2
847,583 + GFF3118 0.84 -1.1
847,584 - GFF3118 0.84 +0.4
847,663 + +0.2
847,664 - +0.8
848,116 + GFF3119 0.58 +0.1
848,116 + GFF3119 0.58 +0.1
848,116 + GFF3119 0.58 -0.8
848,116 + GFF3119 0.58 +1.0
848,117 - GFF3119 0.59 +0.1
848,117 - GFF3119 0.59 +2.0
848,117 - GFF3119 0.59 -0.7
848,225 + -0.4
848,226 - +0.8
848,285 + -0.2
848,285 + -0.1
848,286 - +0.4
848,353 - -0.4
848,464 + +0.0
848,465 - -0.0
848,466 + +0.8
848,467 - -0.9
848,467 - -0.2
848,488 - GFF3120 0.10 -0.3
849,048 + GFF3120 0.32 -0.7
849,048 + GFF3120 0.32 +1.2
849,048 + GFF3120 0.32 +0.2
849,049 - GFF3120 0.32 -0.0
849,049 - GFF3120 0.32 -0.1
849,049 - GFF3120 0.32 -0.1
849,072 + GFF3120 0.32 -0.0
849,169 - GFF3120 0.36 -0.9
849,579 + GFF3120 0.52 -0.3
849,579 + GFF3120 0.52 +0.3
849,580 - GFF3120 0.52 -0.4
849,580 - GFF3120 0.52 +0.1
849,607 - GFF3120 0.53 +0.2
849,607 - GFF3120 0.53 -0.5
849,607 - GFF3120 0.53 -0.3
849,673 + GFF3120 0.55 +0.2
849,673 + GFF3120 0.55 -0.2
849,674 - GFF3120 0.55 -1.2
849,970 - GFF3120 0.66 -2.2
850,002 + GFF3120 0.68 +0.4
850,029 + GFF3120 0.69 +0.5
850,029 + GFF3120 0.69 +0.4
850,029 + GFF3120 0.69 +1.4
850,030 - GFF3120 0.69 -0.1
850,332 + GFF3120 0.80 -0.3
850,332 + GFF3120 0.80 -0.6
850,332 + GFF3120 0.80 -0.6
850,332 + GFF3120 0.80 +0.6
850,332 + GFF3120 0.80 +0.1
850,333 - GFF3120 0.80 -0.4
850,333 - GFF3120 0.80 +0.2
850,333 - GFF3120 0.80 -0.1
850,377 - GFF3120 0.82 +0.9
850,578 + GFF3120 0.89 +0.4
850,732 - +1.4
850,805 + -0.7
851,104 - +0.4
851,280 + GFF3121 0.15 +0.1
851,280 + GFF3121 0.15 -0.3
851,280 + GFF3121 0.15 -0.8
851,280 + GFF3121 0.15 +1.6
851,281 - GFF3121 0.15 -0.1
851,281 - GFF3121 0.15 -0.2
851,400 + GFF3121 0.22 -0.7
851,400 + GFF3121 0.22 -0.2
851,400 + GFF3121 0.22 +0.2
851,401 - GFF3121 0.22 -0.3
851,401 - GFF3121 0.22 -0.7
851,526 + GFF3121 0.28 -0.3
851,526 + GFF3121 0.28 -0.7
851,526 + GFF3121 0.28 +0.3
851,649 + GFF3121 0.34 -0.2
851,649 + GFF3121 0.34 +0.5
851,649 + GFF3121 0.34 +0.1
851,650 - GFF3121 0.35 -0.0
851,650 - GFF3121 0.35 -0.9
851,650 - GFF3121 0.35 +0.5
851,689 - GFF3121 0.37 -0.2
851,689 - GFF3121 0.37 +0.7
851,689 - GFF3121 0.37 -0.3
851,763 + GFF3121 0.40 +0.6
851,764 - GFF3121 0.40 +0.5
851,764 - GFF3121 0.40 -1.7
851,764 - GFF3121 0.40 +0.3
851,788 - GFF3121 0.42 -0.0
851,814 + GFF3121 0.43 +0.5
851,815 - GFF3121 0.43 -1.9

Or see this region's nucleotide sequence