Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3040 and GFF3041 are separated by 166 nucleotides GFF3041 and GFF3042 are separated by 66 nucleotides
GFF3040 - L-threonate dehydrogenase, at 765,607 to 766,545
GFF3040
GFF3041 - L-fuculose phosphate aldolase, at 766,712 to 767,428
GFF3041
GFF3042 - hypothetical protein, at 767,495 to 768,523
GFF3042
Position (kb) 766
767
768 Strain fitness (log2 ratio) -1
0
1 at 765.821 kb on + strand, within GFF3040 at 765.822 kb on - strand, within GFF3040 at 765.896 kb on + strand, within GFF3040 at 765.896 kb on + strand, within GFF3040 at 766.108 kb on - strand, within GFF3040 at 766.108 kb on - strand, within GFF3040 at 766.108 kb on - strand, within GFF3040 at 766.387 kb on + strand, within GFF3040 at 766.507 kb on - strand at 766.603 kb on - strand at 766.798 kb on + strand, within GFF3041 at 766.798 kb on + strand, within GFF3041 at 766.799 kb on - strand, within GFF3041 at 767.003 kb on - strand, within GFF3041 at 767.070 kb on - strand, within GFF3041 at 767.070 kb on - strand, within GFF3041 at 767.070 kb on - strand, within GFF3041 at 767.072 kb on + strand, within GFF3041 at 767.073 kb on - strand, within GFF3041 at 767.108 kb on + strand, within GFF3041 at 767.109 kb on - strand, within GFF3041 at 767.109 kb on - strand, within GFF3041 at 767.267 kb on + strand, within GFF3041 at 767.268 kb on - strand, within GFF3041 at 767.268 kb on - strand, within GFF3041 at 767.268 kb on - strand, within GFF3041 at 767.268 kb on - strand, within GFF3041 at 767.268 kb on - strand, within GFF3041 at 767.411 kb on + strand at 767.411 kb on + strand at 767.412 kb on - strand at 767.499 kb on + strand at 767.704 kb on - strand, within GFF3042 at 767.704 kb on - strand, within GFF3042 at 767.760 kb on + strand, within GFF3042 at 767.760 kb on + strand, within GFF3042 at 767.760 kb on + strand, within GFF3042 at 767.761 kb on - strand, within GFF3042 at 767.761 kb on - strand, within GFF3042 at 767.886 kb on + strand, within GFF3042 at 767.887 kb on - strand, within GFF3042 at 767.887 kb on - strand, within GFF3042 at 767.946 kb on + strand, within GFF3042 at 767.946 kb on + strand, within GFF3042 at 767.947 kb on - strand, within GFF3042 at 768.225 kb on + strand, within GFF3042 at 768.226 kb on - strand, within GFF3042 at 768.252 kb on + strand, within GFF3042 at 768.252 kb on + strand, within GFF3042 at 768.258 kb on + strand, within GFF3042
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 765,821 + GFF3040 0.23 -0.2 765,822 - GFF3040 0.23 -0.5 765,896 + GFF3040 0.31 +0.7 765,896 + GFF3040 0.31 -0.4 766,108 - GFF3040 0.53 -0.5 766,108 - GFF3040 0.53 -0.2 766,108 - GFF3040 0.53 +0.6 766,387 + GFF3040 0.83 +0.5 766,507 - +0.4 766,603 - -0.8 766,798 + GFF3041 0.12 -0.3 766,798 + GFF3041 0.12 -0.3 766,799 - GFF3041 0.12 -0.4 767,003 - GFF3041 0.41 +0.7 767,070 - GFF3041 0.50 +0.9 767,070 - GFF3041 0.50 +0.7 767,070 - GFF3041 0.50 +0.4 767,072 + GFF3041 0.50 -0.3 767,073 - GFF3041 0.50 +1.4 767,108 + GFF3041 0.55 -0.1 767,109 - GFF3041 0.55 -0.6 767,109 - GFF3041 0.55 +0.3 767,267 + GFF3041 0.77 +0.4 767,268 - GFF3041 0.78 +0.9 767,268 - GFF3041 0.78 +0.6 767,268 - GFF3041 0.78 +0.1 767,268 - GFF3041 0.78 -0.1 767,268 - GFF3041 0.78 +0.5 767,411 + +0.4 767,411 + +0.3 767,412 - -0.9 767,499 + +0.5 767,704 - GFF3042 0.20 -0.9 767,704 - GFF3042 0.20 +0.5 767,760 + GFF3042 0.26 +0.3 767,760 + GFF3042 0.26 -0.9 767,760 + GFF3042 0.26 +0.1 767,761 - GFF3042 0.26 -0.0 767,761 - GFF3042 0.26 -0.6 767,886 + GFF3042 0.38 +0.4 767,887 - GFF3042 0.38 -0.2 767,887 - GFF3042 0.38 +0.2 767,946 + GFF3042 0.44 +0.8 767,946 + GFF3042 0.44 -1.1 767,947 - GFF3042 0.44 -0.6 768,225 + GFF3042 0.71 +0.3 768,226 - GFF3042 0.71 -0.3 768,252 + GFF3042 0.74 +0.8 768,252 + GFF3042 0.74 +0.3 768,258 + GFF3042 0.74 -0.2
Or see this region's nucleotide sequence