Strain Fitness in Xanthobacter sp. DMC5 around GFF3030

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3028 and GFF3029 are separated by 16 nucleotidesGFF3029 and GFF3030 are separated by 47 nucleotidesGFF3030 and GFF3031 are separated by 141 nucleotides GFF3028 - Methanol dehydrogenase [cytochrome c] subunit 2, at 752,208 to 752,516 GFF3028 GFF3029 - Cytochrome c-L, at 752,533 to 753,135 GFF3029 GFF3030 - hypothetical protein, at 753,183 to 754,142 GFF3030 GFF3031 - Methanol dehydrogenase [cytochrome c] subunit 1, at 754,284 to 756,170 GFF3031 Position (kb) 753 754 755Strain fitness (log2 ratio) -1 0 1 2at 752.207 kb on - strandat 752.207 kb on - strandat 752.237 kb on - strandat 752.237 kb on - strandat 752.264 kb on - strand, within GFF3028at 752.280 kb on - strand, within GFF3028at 752.350 kb on + strand, within GFF3028at 752.370 kb on - strand, within GFF3028at 752.431 kb on + strand, within GFF3028at 752.507 kb on + strandat 752.508 kb on - strandat 752.508 kb on - strandat 752.681 kb on + strand, within GFF3029at 752.681 kb on + strand, within GFF3029at 752.681 kb on + strand, within GFF3029at 752.682 kb on - strand, within GFF3029at 752.738 kb on + strand, within GFF3029at 752.738 kb on + strand, within GFF3029at 752.739 kb on - strand, within GFF3029at 752.739 kb on - strand, within GFF3029at 752.822 kb on + strand, within GFF3029at 752.822 kb on + strand, within GFF3029at 752.823 kb on - strand, within GFF3029at 752.823 kb on - strand, within GFF3029at 752.823 kb on - strand, within GFF3029at 752.823 kb on - strand, within GFF3029at 752.936 kb on + strand, within GFF3029at 752.937 kb on - strand, within GFF3029at 752.963 kb on + strand, within GFF3029at 753.034 kb on - strand, within GFF3029at 753.051 kb on + strand, within GFF3029at 753.407 kb on - strand, within GFF3030at 753.407 kb on - strand, within GFF3030at 753.496 kb on + strand, within GFF3030at 753.497 kb on - strand, within GFF3030at 753.532 kb on + strand, within GFF3030at 753.533 kb on - strand, within GFF3030at 753.538 kb on + strand, within GFF3030at 753.538 kb on + strand, within GFF3030at 753.556 kb on + strand, within GFF3030at 753.557 kb on - strand, within GFF3030at 753.557 kb on - strand, within GFF3030at 753.688 kb on + strand, within GFF3030at 753.689 kb on - strand, within GFF3030at 753.689 kb on - strand, within GFF3030at 753.689 kb on - strand, within GFF3030at 753.700 kb on + strand, within GFF3030at 753.703 kb on + strand, within GFF3030at 753.703 kb on + strand, within GFF3030at 753.703 kb on + strand, within GFF3030at 753.754 kb on - strand, within GFF3030at 753.754 kb on - strand, within GFF3030at 753.881 kb on + strand, within GFF3030at 754.301 kb on - strandat 754.301 kb on - strandat 754.324 kb on + strandat 754.324 kb on + strandat 754.379 kb on - strandat 754.478 kb on - strand, within GFF3031at 754.478 kb on - strand, within GFF3031at 754.480 kb on + strand, within GFF3031at 754.480 kb on + strand, within GFF3031at 754.481 kb on - strand, within GFF3031at 754.481 kb on - strand, within GFF3031at 754.481 kb on - strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.492 kb on + strand, within GFF3031at 754.493 kb on - strand, within GFF3031at 754.513 kb on + strand, within GFF3031at 754.513 kb on + strand, within GFF3031at 754.513 kb on + strand, within GFF3031at 754.514 kb on - strand, within GFF3031at 754.616 kb on - strand, within GFF3031at 754.687 kb on + strand, within GFF3031at 754.688 kb on - strand, within GFF3031at 754.688 kb on - strand, within GFF3031at 754.708 kb on + strand, within GFF3031at 754.709 kb on - strand, within GFF3031at 754.735 kb on + strand, within GFF3031at 754.735 kb on + strand, within GFF3031at 754.735 kb on + strand, within GFF3031at 754.735 kb on + strand, within GFF3031at 754.765 kb on + strand, within GFF3031at 754.765 kb on + strand, within GFF3031at 754.766 kb on - strand, within GFF3031at 754.882 kb on + strand, within GFF3031at 754.883 kb on - strand, within GFF3031at 754.883 kb on - strand, within GFF3031at 754.961 kb on - strand, within GFF3031at 755.060 kb on + strand, within GFF3031at 755.074 kb on + strand, within GFF3031at 755.075 kb on - strand, within GFF3031

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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752,207 - +0.2
752,207 - -0.9
752,237 - +1.4
752,237 - +0.6
752,264 - GFF3028 0.18 +1.2
752,280 - GFF3028 0.23 +0.3
752,350 + GFF3028 0.46 +0.8
752,370 - GFF3028 0.52 -0.2
752,431 + GFF3028 0.72 +0.9
752,507 + +0.2
752,508 - +0.9
752,508 - +0.7
752,681 + GFF3029 0.25 +0.6
752,681 + GFF3029 0.25 +1.3
752,681 + GFF3029 0.25 +0.8
752,682 - GFF3029 0.25 +0.4
752,738 + GFF3029 0.34 +0.5
752,738 + GFF3029 0.34 +0.2
752,739 - GFF3029 0.34 +0.4
752,739 - GFF3029 0.34 +0.3
752,822 + GFF3029 0.48 -0.1
752,822 + GFF3029 0.48 +0.9
752,823 - GFF3029 0.48 +1.3
752,823 - GFF3029 0.48 +0.6
752,823 - GFF3029 0.48 +0.1
752,823 - GFF3029 0.48 +0.7
752,936 + GFF3029 0.67 -0.0
752,937 - GFF3029 0.67 +0.2
752,963 + GFF3029 0.71 +0.7
753,034 - GFF3029 0.83 +0.6
753,051 + GFF3029 0.86 +0.6
753,407 - GFF3030 0.23 +0.8
753,407 - GFF3030 0.23 +1.3
753,496 + GFF3030 0.33 +1.0
753,497 - GFF3030 0.33 +0.7
753,532 + GFF3030 0.36 +0.5
753,533 - GFF3030 0.36 +0.5
753,538 + GFF3030 0.37 +1.6
753,538 + GFF3030 0.37 +0.7
753,556 + GFF3030 0.39 +1.2
753,557 - GFF3030 0.39 +1.4
753,557 - GFF3030 0.39 +0.7
753,688 + GFF3030 0.53 +0.1
753,689 - GFF3030 0.53 +1.2
753,689 - GFF3030 0.53 +0.5
753,689 - GFF3030 0.53 +1.1
753,700 + GFF3030 0.54 +0.2
753,703 + GFF3030 0.54 +1.7
753,703 + GFF3030 0.54 +0.4
753,703 + GFF3030 0.54 +1.3
753,754 - GFF3030 0.59 +1.1
753,754 - GFF3030 0.59 +0.6
753,881 + GFF3030 0.73 +0.8
754,301 - +0.8
754,301 - +1.8
754,324 + +1.0
754,324 + +1.1
754,379 - +0.8
754,478 - GFF3031 0.10 -0.1
754,478 - GFF3031 0.10 +0.5
754,480 + GFF3031 0.10 +1.4
754,480 + GFF3031 0.10 +0.8
754,481 - GFF3031 0.10 +0.9
754,481 - GFF3031 0.10 +1.0
754,481 - GFF3031 0.10 +0.6
754,492 + GFF3031 0.11 -0.2
754,492 + GFF3031 0.11 +1.1
754,492 + GFF3031 0.11 +1.0
754,492 + GFF3031 0.11 +1.0
754,492 + GFF3031 0.11 +1.3
754,492 + GFF3031 0.11 +0.8
754,492 + GFF3031 0.11 +0.6
754,492 + GFF3031 0.11 +0.8
754,492 + GFF3031 0.11 +0.6
754,493 - GFF3031 0.11 +0.1
754,513 + GFF3031 0.12 +1.0
754,513 + GFF3031 0.12 +0.4
754,513 + GFF3031 0.12 +0.3
754,514 - GFF3031 0.12 +0.1
754,616 - GFF3031 0.18 +1.5
754,687 + GFF3031 0.21 +0.8
754,688 - GFF3031 0.21 +1.2
754,688 - GFF3031 0.21 +0.3
754,708 + GFF3031 0.22 +0.2
754,709 - GFF3031 0.23 +0.8
754,735 + GFF3031 0.24 -0.1
754,735 + GFF3031 0.24 -0.2
754,735 + GFF3031 0.24 +1.6
754,735 + GFF3031 0.24 +1.0
754,765 + GFF3031 0.25 +1.0
754,765 + GFF3031 0.25 +0.7
754,766 - GFF3031 0.26 +0.5
754,882 + GFF3031 0.32 +1.2
754,883 - GFF3031 0.32 +0.9
754,883 - GFF3031 0.32 +2.0
754,961 - GFF3031 0.36 -0.3
755,060 + GFF3031 0.41 +0.8
755,074 + GFF3031 0.42 +1.4
755,075 - GFF3031 0.42 +0.8

Or see this region's nucleotide sequence