Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2950 and GFF2951 are separated by 69 nucleotides GFF2951 and GFF2952 are separated by 94 nucleotides GFF2952 and GFF2953 are separated by 185 nucleotides GFF2953 and GFF2954 are separated by 67 nucleotides
GFF2950 - NADH dehydrogenase-like protein, at 676,281 to 677,504
GFF2950
GFF2951 - Toluene-4-monooxygenase system, ferredoxin component, at 677,574 to 677,912
GFF2951
GFF2952 - Thioredoxin 2, at 678,007 to 678,495
GFF2952
GFF2953 - hypothetical protein, at 678,681 to 678,980
GFF2953
GFF2954 - Taurine import ATP-binding protein TauB, at 679,048 to 679,878
GFF2954
Position (kb) 678
679 Strain fitness (log2 ratio) -1
0
1 at 677.111 kb on - strand, within GFF2950 at 677.195 kb on - strand, within GFF2950 at 677.195 kb on - strand, within GFF2950 at 677.195 kb on - strand, within GFF2950 at 677.529 kb on + strand at 677.529 kb on + strand at 677.530 kb on - strand at 677.530 kb on - strand at 677.530 kb on - strand at 677.530 kb on - strand at 677.647 kb on + strand, within GFF2951 at 677.647 kb on + strand, within GFF2951 at 677.648 kb on - strand, within GFF2951 at 678.041 kb on + strand at 678.041 kb on + strand at 678.042 kb on - strand at 678.120 kb on - strand, within GFF2952 at 678.146 kb on + strand, within GFF2952 at 678.294 kb on - strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.306 kb on + strand, within GFF2952 at 678.307 kb on - strand, within GFF2952 at 678.307 kb on - strand, within GFF2952 at 678.307 kb on - strand, within GFF2952 at 678.424 kb on - strand, within GFF2952 at 678.424 kb on - strand, within GFF2952 at 678.581 kb on - strand at 678.846 kb on + strand, within GFF2953 at 678.990 kb on - strand at 678.994 kb on + strand at 678.994 kb on + strand at 679.100 kb on + strand at 679.101 kb on - strand at 679.163 kb on + strand, within GFF2954 at 679.163 kb on + strand, within GFF2954 at 679.164 kb on - strand, within GFF2954 at 679.164 kb on - strand, within GFF2954 at 679.164 kb on - strand, within GFF2954 at 679.274 kb on + strand, within GFF2954
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 677,111 - GFF2950 0.68 +0.4 677,195 - GFF2950 0.75 +0.4 677,195 - GFF2950 0.75 +0.3 677,195 - GFF2950 0.75 -0.2 677,529 + -0.8 677,529 + +0.6 677,530 - +1.4 677,530 - +0.1 677,530 - -0.2 677,530 - -0.1 677,647 + GFF2951 0.22 +0.2 677,647 + GFF2951 0.22 -0.1 677,648 - GFF2951 0.22 +0.6 678,041 + -0.1 678,041 + -0.3 678,042 - -0.1 678,120 - GFF2952 0.23 +0.2 678,146 + GFF2952 0.28 -1.3 678,294 - GFF2952 0.59 +0.9 678,306 + GFF2952 0.61 -0.1 678,306 + GFF2952 0.61 +0.1 678,306 + GFF2952 0.61 +0.4 678,306 + GFF2952 0.61 -0.6 678,306 + GFF2952 0.61 +0.2 678,307 - GFF2952 0.61 +0.6 678,307 - GFF2952 0.61 -0.1 678,307 - GFF2952 0.61 +0.7 678,424 - GFF2952 0.85 -0.9 678,424 - GFF2952 0.85 +0.1 678,581 - +0.1 678,846 + GFF2953 0.55 -0.6 678,990 - -0.2 678,994 + +0.5 678,994 + -0.3 679,100 + -0.1 679,101 - -0.4 679,163 + GFF2954 0.14 +1.1 679,163 + GFF2954 0.14 +1.0 679,164 - GFF2954 0.14 -1.0 679,164 - GFF2954 0.14 +0.1 679,164 - GFF2954 0.14 +0.1 679,274 + GFF2954 0.27 -0.0
Or see this region's nucleotide sequence