Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2931 and GFF2932 are separated by 109 nucleotides GFF2932 and GFF2933 are separated by 528 nucleotides GFF2933 and GFF2934 are separated by 305 nucleotides
GFF2931 - hypothetical protein, at 653,346 to 653,660
GFF2931
GFF2932 - hypothetical protein, at 653,770 to 653,967
GFF2932
GFF2933 - Glutamine synthetase, at 654,496 to 655,530
GFF2933
GFF2934 - Trans-aconitate 2-methyltransferase, at 655,836 to 656,609
GFF2934
Position (kb) 654
655
656 Strain fitness (log2 ratio) -1
0
1 at 653.931 kb on - strand, within GFF2932 at 654.043 kb on + strand at 654.044 kb on - strand at 654.044 kb on - strand at 654.044 kb on - strand at 654.353 kb on + strand at 654.382 kb on + strand at 654.383 kb on - strand at 654.386 kb on + strand at 654.387 kb on - strand at 654.387 kb on - strand at 654.536 kb on - strand at 654.581 kb on - strand at 654.581 kb on - strand at 654.691 kb on + strand, within GFF2933 at 654.732 kb on - strand, within GFF2933 at 654.830 kb on - strand, within GFF2933 at 654.839 kb on - strand, within GFF2933 at 654.839 kb on - strand, within GFF2933 at 654.899 kb on - strand, within GFF2933 at 654.901 kb on + strand, within GFF2933 at 654.901 kb on + strand, within GFF2933 at 654.902 kb on - strand, within GFF2933 at 654.902 kb on - strand, within GFF2933 at 654.903 kb on + strand, within GFF2933 at 654.903 kb on + strand, within GFF2933 at 655.117 kb on + strand, within GFF2933 at 655.118 kb on - strand, within GFF2933 at 655.204 kb on + strand, within GFF2933 at 655.205 kb on - strand, within GFF2933 at 655.205 kb on - strand, within GFF2933 at 655.288 kb on + strand, within GFF2933 at 655.414 kb on + strand, within GFF2933 at 655.463 kb on - strand at 655.685 kb on + strand at 655.685 kb on + strand at 655.686 kb on - strand at 655.686 kb on - strand at 655.768 kb on - strand at 655.769 kb on + strand at 655.769 kb on + strand at 655.770 kb on - strand at 655.770 kb on - strand at 655.863 kb on + strand at 655.863 kb on + strand at 655.864 kb on - strand at 656.130 kb on + strand, within GFF2934 at 656.349 kb on + strand, within GFF2934 at 656.349 kb on + strand, within GFF2934 at 656.350 kb on - strand, within GFF2934 at 656.352 kb on + strand, within GFF2934 at 656.353 kb on - strand, within GFF2934 at 656.353 kb on - strand, within GFF2934 at 656.353 kb on - strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.403 kb on + strand, within GFF2934 at 656.404 kb on - strand, within GFF2934 at 656.404 kb on - strand, within GFF2934 at 656.404 kb on - strand, within GFF2934 at 656.404 kb on - strand, within GFF2934 at 656.405 kb on + strand, within GFF2934 at 656.405 kb on + strand, within GFF2934 at 656.517 kb on + strand, within GFF2934 at 656.517 kb on + strand, within GFF2934 at 656.518 kb on - strand, within GFF2934
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 653,931 - GFF2932 0.81 +0.5 654,043 + +0.1 654,044 - -0.5 654,044 - +0.3 654,044 - +0.2 654,353 + +1.2 654,382 + +1.0 654,383 - +1.2 654,386 + +0.7 654,387 - +1.5 654,387 - +1.2 654,536 - +1.3 654,581 - +0.3 654,581 - +1.0 654,691 + GFF2933 0.19 +0.2 654,732 - GFF2933 0.23 -0.5 654,830 - GFF2933 0.32 -0.3 654,839 - GFF2933 0.33 -0.2 654,839 - GFF2933 0.33 -0.5 654,899 - GFF2933 0.39 +0.9 654,901 + GFF2933 0.39 +0.6 654,901 + GFF2933 0.39 -0.6 654,902 - GFF2933 0.39 -0.5 654,902 - GFF2933 0.39 -0.4 654,903 + GFF2933 0.39 +0.2 654,903 + GFF2933 0.39 -1.7 655,117 + GFF2933 0.60 +0.5 655,118 - GFF2933 0.60 +0.3 655,204 + GFF2933 0.68 +1.6 655,205 - GFF2933 0.69 +1.4 655,205 - GFF2933 0.69 +0.8 655,288 + GFF2933 0.77 -1.0 655,414 + GFF2933 0.89 -0.3 655,463 - +0.4 655,685 + -0.2 655,685 + -0.7 655,686 - -0.3 655,686 - -0.2 655,768 - +0.1 655,769 + +0.1 655,769 + +0.2 655,770 - -0.1 655,770 - +0.1 655,863 + +0.0 655,863 + +0.2 655,864 - -0.6 656,130 + GFF2934 0.38 -0.7 656,349 + GFF2934 0.66 +1.2 656,349 + GFF2934 0.66 -1.4 656,350 - GFF2934 0.66 +0.0 656,352 + GFF2934 0.67 +0.2 656,353 - GFF2934 0.67 +0.8 656,353 - GFF2934 0.67 +0.7 656,353 - GFF2934 0.67 -0.5 656,403 + GFF2934 0.73 -0.6 656,403 + GFF2934 0.73 +0.1 656,403 + GFF2934 0.73 +1.4 656,403 + GFF2934 0.73 +0.2 656,403 + GFF2934 0.73 -0.7 656,403 + GFF2934 0.73 +0.4 656,404 - GFF2934 0.73 +0.4 656,404 - GFF2934 0.73 -0.3 656,404 - GFF2934 0.73 +0.7 656,404 - GFF2934 0.73 -0.4 656,405 + GFF2934 0.74 +0.1 656,405 + GFF2934 0.74 +0.1 656,517 + GFF2934 0.88 -0.5 656,517 + GFF2934 0.88 +0.8 656,518 - GFF2934 0.88 +0.7
Or see this region's nucleotide sequence