Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2927 and GFF2928 are separated by 4 nucleotides GFF2928 and GFF2929 are separated by 77 nucleotides GFF2929 and GFF2930 are separated by 214 nucleotides
GFF2927 - hypothetical protein, at 648,569 to 649,126
GFF2927
GFF2928 - hypothetical protein, at 649,131 to 649,805
GFF2928
GFF2929 - hypothetical protein, at 649,883 to 651,589
GFF2929
GFF2930 - hypothetical protein, at 651,804 to 653,174
GFF2930
Position (kb) 649
650
651
652 Strain fitness (log2 ratio) -1
0
1
2 at 649.082 kb on + strand at 649.082 kb on + strand at 649.083 kb on - strand at 649.083 kb on - strand at 649.083 kb on - strand at 649.375 kb on + strand, within GFF2928 at 649.375 kb on + strand, within GFF2928 at 649.376 kb on - strand, within GFF2928 at 649.376 kb on - strand, within GFF2928 at 649.376 kb on - strand, within GFF2928 at 649.678 kb on + strand, within GFF2928 at 649.679 kb on - strand, within GFF2928 at 649.684 kb on + strand, within GFF2928 at 649.684 kb on + strand, within GFF2928 at 649.684 kb on + strand, within GFF2928 at 649.684 kb on + strand, within GFF2928 at 649.684 kb on + strand, within GFF2928 at 649.790 kb on + strand at 649.791 kb on - strand at 649.791 kb on - strand at 649.842 kb on - strand at 649.842 kb on - strand at 649.847 kb on + strand at 649.885 kb on - strand at 650.513 kb on + strand, within GFF2929 at 650.664 kb on + strand, within GFF2929 at 650.664 kb on + strand, within GFF2929 at 650.664 kb on + strand, within GFF2929 at 650.665 kb on - strand, within GFF2929 at 650.665 kb on - strand, within GFF2929 at 650.740 kb on + strand, within GFF2929 at 650.741 kb on - strand, within GFF2929 at 650.748 kb on + strand, within GFF2929 at 650.748 kb on + strand, within GFF2929 at 650.749 kb on - strand, within GFF2929 at 650.792 kb on + strand, within GFF2929 at 651.102 kb on + strand, within GFF2929 at 651.103 kb on - strand, within GFF2929 at 651.103 kb on - strand, within GFF2929 at 651.288 kb on + strand, within GFF2929 at 651.288 kb on + strand, within GFF2929 at 651.288 kb on + strand, within GFF2929 at 651.289 kb on - strand, within GFF2929 at 651.306 kb on + strand, within GFF2929 at 651.336 kb on + strand, within GFF2929 at 651.336 kb on + strand, within GFF2929 at 651.337 kb on - strand, within GFF2929 at 651.337 kb on - strand, within GFF2929 at 651.512 kb on - strand at 651.567 kb on + strand at 651.711 kb on - strand at 651.821 kb on - strand at 651.863 kb on + strand at 651.937 kb on + strand at 651.938 kb on - strand at 651.981 kb on + strand, within GFF2930 at 651.981 kb on + strand, within GFF2930 at 651.982 kb on - strand, within GFF2930 at 651.982 kb on - strand, within GFF2930 at 651.982 kb on - strand, within GFF2930 at 652.074 kb on - strand, within GFF2930 at 652.136 kb on + strand, within GFF2930 at 652.136 kb on + strand, within GFF2930 at 652.557 kb on - strand, within GFF2930
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 649,082 + -0.7 649,082 + +0.6 649,083 - -0.3 649,083 - -0.4 649,083 - -1.3 649,375 + GFF2928 0.36 +0.1 649,375 + GFF2928 0.36 -0.2 649,376 - GFF2928 0.36 -0.0 649,376 - GFF2928 0.36 -0.5 649,376 - GFF2928 0.36 +0.2 649,678 + GFF2928 0.81 +0.4 649,679 - GFF2928 0.81 +1.8 649,684 + GFF2928 0.82 -0.1 649,684 + GFF2928 0.82 +0.6 649,684 + GFF2928 0.82 -0.5 649,684 + GFF2928 0.82 +0.1 649,684 + GFF2928 0.82 -0.1 649,790 + +0.1 649,791 - -1.6 649,791 - +0.5 649,842 - +0.2 649,842 - +0.2 649,847 + +0.3 649,885 - +0.5 650,513 + GFF2929 0.37 -0.1 650,664 + GFF2929 0.46 -0.5 650,664 + GFF2929 0.46 +0.1 650,664 + GFF2929 0.46 +0.0 650,665 - GFF2929 0.46 +0.8 650,665 - GFF2929 0.46 +0.3 650,740 + GFF2929 0.50 -0.0 650,741 - GFF2929 0.50 -0.4 650,748 + GFF2929 0.51 +0.5 650,748 + GFF2929 0.51 +0.1 650,749 - GFF2929 0.51 +0.5 650,792 + GFF2929 0.53 -0.8 651,102 + GFF2929 0.71 +0.0 651,103 - GFF2929 0.71 +0.1 651,103 - GFF2929 0.71 -0.1 651,288 + GFF2929 0.82 +0.8 651,288 + GFF2929 0.82 +0.3 651,288 + GFF2929 0.82 +0.3 651,289 - GFF2929 0.82 -0.2 651,306 + GFF2929 0.83 -0.0 651,336 + GFF2929 0.85 -0.6 651,336 + GFF2929 0.85 -0.6 651,337 - GFF2929 0.85 +0.7 651,337 - GFF2929 0.85 +0.1 651,512 - -0.5 651,567 + -0.1 651,711 - +0.5 651,821 - -0.9 651,863 + -0.2 651,937 + +0.2 651,938 - -0.2 651,981 + GFF2930 0.13 -0.5 651,981 + GFF2930 0.13 -0.7 651,982 - GFF2930 0.13 -0.1 651,982 - GFF2930 0.13 +0.5 651,982 - GFF2930 0.13 -0.4 652,074 - GFF2930 0.20 -0.4 652,136 + GFF2930 0.24 +0.2 652,136 + GFF2930 0.24 +0.5 652,557 - GFF2930 0.55 -0.7
Or see this region's nucleotide sequence