Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2915 and GFF2916 are separated by 232 nucleotides GFF2916 and GFF2917 are separated by 126 nucleotides
GFF2915 - hypothetical protein, at 632,934 to 634,001
GFF2915
GFF2916 - N-carbamoylsarcosine amidase, at 634,234 to 634,944
GFF2916
GFF2917 - Hca operon transcriptional activator HcaR, at 635,071 to 635,964
GFF2917
Position (kb) 634
635 Strain fitness (log2 ratio) -1
0
1 at 633.286 kb on + strand, within GFF2915 at 633.286 kb on + strand, within GFF2915 at 633.287 kb on - strand, within GFF2915 at 633.287 kb on - strand, within GFF2915 at 633.287 kb on - strand, within GFF2915 at 633.287 kb on - strand, within GFF2915 at 633.349 kb on + strand, within GFF2915 at 633.349 kb on + strand, within GFF2915 at 633.349 kb on + strand, within GFF2915 at 633.451 kb on + strand, within GFF2915 at 633.452 kb on - strand, within GFF2915 at 633.553 kb on + strand, within GFF2915 at 633.558 kb on + strand, within GFF2915 at 633.573 kb on - strand, within GFF2915 at 633.573 kb on - strand, within GFF2915 at 633.574 kb on + strand, within GFF2915 at 633.574 kb on + strand, within GFF2915 at 633.575 kb on - strand, within GFF2915 at 633.628 kb on + strand, within GFF2915 at 633.628 kb on + strand, within GFF2915 at 633.629 kb on - strand, within GFF2915 at 633.629 kb on - strand, within GFF2915 at 633.653 kb on + strand, within GFF2915 at 633.654 kb on - strand, within GFF2915 at 633.654 kb on - strand, within GFF2915 at 634.016 kb on + strand at 634.016 kb on + strand at 634.100 kb on + strand at 634.101 kb on - strand at 634.101 kb on - strand at 634.502 kb on + strand, within GFF2916 at 634.502 kb on + strand, within GFF2916 at 634.502 kb on + strand, within GFF2916 at 634.502 kb on + strand, within GFF2916 at 634.502 kb on + strand, within GFF2916 at 634.503 kb on - strand, within GFF2916 at 634.503 kb on - strand, within GFF2916 at 634.503 kb on - strand, within GFF2916 at 634.503 kb on - strand, within GFF2916 at 634.564 kb on + strand, within GFF2916 at 634.564 kb on + strand, within GFF2916 at 634.565 kb on - strand, within GFF2916 at 634.679 kb on + strand, within GFF2916 at 634.679 kb on + strand, within GFF2916 at 634.679 kb on + strand, within GFF2916 at 635.042 kb on + strand at 635.365 kb on + strand, within GFF2917 at 635.365 kb on + strand, within GFF2917 at 635.366 kb on - strand, within GFF2917 at 635.447 kb on + strand, within GFF2917 at 635.548 kb on + strand, within GFF2917 at 635.548 kb on + strand, within GFF2917 at 635.548 kb on + strand, within GFF2917 at 635.548 kb on + strand, within GFF2917 at 635.548 kb on + strand, within GFF2917 at 635.549 kb on - strand, within GFF2917 at 635.570 kb on - strand, within GFF2917 at 635.570 kb on - strand, within GFF2917 at 635.570 kb on - strand, within GFF2917 at 635.801 kb on - strand, within GFF2917 at 635.935 kb on + strand at 635.936 kb on - strand at 635.936 kb on - strand at 635.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 633,286 + GFF2915 0.33 +0.1 633,286 + GFF2915 0.33 +0.4 633,287 - GFF2915 0.33 +0.3 633,287 - GFF2915 0.33 -0.1 633,287 - GFF2915 0.33 +0.3 633,287 - GFF2915 0.33 +0.0 633,349 + GFF2915 0.39 +0.3 633,349 + GFF2915 0.39 +0.2 633,349 + GFF2915 0.39 +0.3 633,451 + GFF2915 0.48 +0.2 633,452 - GFF2915 0.49 -0.7 633,553 + GFF2915 0.58 -0.3 633,558 + GFF2915 0.58 +0.1 633,573 - GFF2915 0.60 +0.1 633,573 - GFF2915 0.60 +0.3 633,574 + GFF2915 0.60 -0.4 633,574 + GFF2915 0.60 -1.0 633,575 - GFF2915 0.60 -0.4 633,628 + GFF2915 0.65 +0.4 633,628 + GFF2915 0.65 +0.6 633,629 - GFF2915 0.65 -0.6 633,629 - GFF2915 0.65 +0.2 633,653 + GFF2915 0.67 +0.5 633,654 - GFF2915 0.67 +0.3 633,654 - GFF2915 0.67 +0.7 634,016 + +0.6 634,016 + -1.3 634,100 + +0.4 634,101 - +0.1 634,101 - +0.3 634,502 + GFF2916 0.38 -0.0 634,502 + GFF2916 0.38 -0.2 634,502 + GFF2916 0.38 -0.3 634,502 + GFF2916 0.38 +0.3 634,502 + GFF2916 0.38 -0.3 634,503 - GFF2916 0.38 +1.2 634,503 - GFF2916 0.38 -0.0 634,503 - GFF2916 0.38 -0.0 634,503 - GFF2916 0.38 +0.9 634,564 + GFF2916 0.46 -0.0 634,564 + GFF2916 0.46 +0.2 634,565 - GFF2916 0.47 +0.7 634,679 + GFF2916 0.63 -1.1 634,679 + GFF2916 0.63 +0.0 634,679 + GFF2916 0.63 -0.5 635,042 + +0.7 635,365 + GFF2917 0.33 +1.1 635,365 + GFF2917 0.33 -0.6 635,366 - GFF2917 0.33 -0.3 635,447 + GFF2917 0.42 +0.2 635,548 + GFF2917 0.53 +0.2 635,548 + GFF2917 0.53 -0.5 635,548 + GFF2917 0.53 -0.6 635,548 + GFF2917 0.53 +0.2 635,548 + GFF2917 0.53 -0.7 635,549 - GFF2917 0.53 +0.7 635,570 - GFF2917 0.56 +0.1 635,570 - GFF2917 0.56 +0.2 635,570 - GFF2917 0.56 +1.0 635,801 - GFF2917 0.82 +0.8 635,935 + -0.9 635,936 - +0.6 635,936 - -0.8 635,936 - +0.3
Or see this region's nucleotide sequence