Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2899 and GFF2900 are separated by 68 nucleotides GFF2900 and GFF2901 are separated by 15 nucleotides GFF2901 and GFF2902 overlap by 11 nucleotides
GFF2899 - Cardiolipin synthase A, at 614,423 to 615,868
GFF2899
GFF2900 - 3-keto-5-aminohexanoate cleavage enzyme, at 615,937 to 616,785
GFF2900
GFF2901 - C4-dicarboxylate transport transcriptional regulatory protein DctD, at 616,801 to 618,174
GFF2901
GFF2902 - C4-dicarboxylate transport sensor protein DctB, at 618,164 to 620,041
GFF2902
Position (kb) 616
617
618
619 Strain fitness (log2 ratio) -1
0
1 at 615.834 kb on + strand at 615.906 kb on + strand at 615.907 kb on - strand at 615.907 kb on - strand at 615.947 kb on + strand at 615.948 kb on - strand at 616.302 kb on - strand, within GFF2900 at 616.325 kb on + strand, within GFF2900 at 616.326 kb on - strand, within GFF2900 at 616.484 kb on + strand, within GFF2900 at 616.485 kb on - strand, within GFF2900 at 616.485 kb on - strand, within GFF2900 at 616.485 kb on - strand, within GFF2900 at 616.485 kb on - strand, within GFF2900 at 616.566 kb on - strand, within GFF2900 at 616.566 kb on - strand, within GFF2900 at 616.614 kb on + strand, within GFF2900 at 617.114 kb on + strand, within GFF2901 at 617.114 kb on + strand, within GFF2901 at 617.114 kb on + strand, within GFF2901 at 617.114 kb on + strand, within GFF2901 at 617.115 kb on - strand, within GFF2901 at 617.272 kb on - strand, within GFF2901 at 617.310 kb on + strand, within GFF2901 at 617.310 kb on + strand, within GFF2901 at 617.555 kb on - strand, within GFF2901 at 617.831 kb on + strand, within GFF2901
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 615,834 + -0.5 615,906 + +0.1 615,907 - +1.0 615,907 - +0.2 615,947 + +0.9 615,948 - -0.4 616,302 - GFF2900 0.43 -1.2 616,325 + GFF2900 0.46 +0.8 616,326 - GFF2900 0.46 +0.0 616,484 + GFF2900 0.64 +0.7 616,485 - GFF2900 0.65 -0.6 616,485 - GFF2900 0.65 -0.9 616,485 - GFF2900 0.65 +0.3 616,485 - GFF2900 0.65 -0.3 616,566 - GFF2900 0.74 -1.1 616,566 - GFF2900 0.74 +0.4 616,614 + GFF2900 0.80 +1.0 617,114 + GFF2901 0.23 -0.9 617,114 + GFF2901 0.23 -0.4 617,114 + GFF2901 0.23 -1.3 617,114 + GFF2901 0.23 -0.7 617,115 - GFF2901 0.23 +0.4 617,272 - GFF2901 0.34 -0.1 617,310 + GFF2901 0.37 -0.1 617,310 + GFF2901 0.37 +0.6 617,555 - GFF2901 0.55 +0.0 617,831 + GFF2901 0.75 +0.6
Or see this region's nucleotide sequence