Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2892 and GFF2893 are separated by 34 nucleotides GFF2893 and GFF2894 overlap by 4 nucleotides GFF2894 and GFF2895 overlap by 4 nucleotides
GFF2892 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 605,959 to 607,119
GFF2892
GFF2893 - hypothetical protein, at 607,154 to 608,368
GFF2893
GFF2894 - hypothetical protein, at 608,365 to 609,228
GFF2894
GFF2895 - Caffeine dehydrogenase subunit alpha, at 609,225 to 611,582
GFF2895
Position (kb) 607
608
609 Strain fitness (log2 ratio) -2
-1
0
1 at 606.183 kb on - strand, within GFF2892 at 606.183 kb on - strand, within GFF2892 at 606.183 kb on - strand, within GFF2892 at 606.248 kb on + strand, within GFF2892 at 606.770 kb on + strand, within GFF2892 at 606.770 kb on + strand, within GFF2892 at 606.770 kb on + strand, within GFF2892 at 606.770 kb on + strand, within GFF2892 at 606.986 kb on + strand, within GFF2892 at 606.986 kb on + strand, within GFF2892 at 606.986 kb on + strand, within GFF2892 at 606.987 kb on - strand, within GFF2892 at 606.987 kb on - strand, within GFF2892 at 606.987 kb on - strand, within GFF2892 at 607.374 kb on + strand, within GFF2893 at 607.649 kb on + strand, within GFF2893 at 607.661 kb on + strand, within GFF2893 at 608.616 kb on + strand, within GFF2894 at 608.617 kb on - strand, within GFF2894 at 608.681 kb on + strand, within GFF2894 at 608.682 kb on - strand, within GFF2894 at 608.952 kb on + strand, within GFF2894 at 608.952 kb on + strand, within GFF2894 at 609.014 kb on + strand, within GFF2894 at 609.014 kb on + strand, within GFF2894 at 609.015 kb on - strand, within GFF2894 at 609.015 kb on - strand, within GFF2894 at 609.021 kb on + strand, within GFF2894 at 609.021 kb on + strand, within GFF2894 at 609.022 kb on - strand, within GFF2894 at 609.022 kb on - strand, within GFF2894 at 609.022 kb on - strand, within GFF2894 at 609.101 kb on - strand, within GFF2894
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 606,183 - GFF2892 0.19 -0.6 606,183 - GFF2892 0.19 -0.1 606,183 - GFF2892 0.19 -1.4 606,248 + GFF2892 0.25 +0.2 606,770 + GFF2892 0.70 +0.4 606,770 + GFF2892 0.70 +0.2 606,770 + GFF2892 0.70 -0.7 606,770 + GFF2892 0.70 +0.4 606,986 + GFF2892 0.88 +1.0 606,986 + GFF2892 0.88 +0.4 606,986 + GFF2892 0.88 -0.6 606,987 - GFF2892 0.89 +0.4 606,987 - GFF2892 0.89 -0.7 606,987 - GFF2892 0.89 -0.3 607,374 + GFF2893 0.18 -1.0 607,649 + GFF2893 0.41 -2.3 607,661 + GFF2893 0.42 -0.3 608,616 + GFF2894 0.29 -0.6 608,617 - GFF2894 0.29 +0.2 608,681 + GFF2894 0.37 +0.2 608,682 - GFF2894 0.37 +0.1 608,952 + GFF2894 0.68 +0.1 608,952 + GFF2894 0.68 +0.7 609,014 + GFF2894 0.75 -0.4 609,014 + GFF2894 0.75 +0.0 609,015 - GFF2894 0.75 -0.1 609,015 - GFF2894 0.75 -0.1 609,021 + GFF2894 0.76 -0.5 609,021 + GFF2894 0.76 +0.0 609,022 - GFF2894 0.76 -1.2 609,022 - GFF2894 0.76 -0.6 609,022 - GFF2894 0.76 -1.1 609,101 - GFF2894 0.85 -2.7
Or see this region's nucleotide sequence