Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF287 and GFF288 are separated by 41 nucleotides GFF288 and GFF289 are separated by 159 nucleotides GFF289 and GFF290 are separated by 49 nucleotides GFF290 and GFF291 are separated by 73 nucleotides
GFF287 - hypothetical protein, at 303,626 to 303,973
GFF287
GFF288 - Peptidoglycan-associated lipoprotein, at 304,015 to 304,626
GFF288
GFF289 - hypothetical protein, at 304,786 to 305,229
GFF289
GFF290 - hypothetical protein, at 305,279 to 305,764
GFF290
GFF291 - Glutamine synthetase, at 305,838 to 307,193
GFF291
Position (kb) 304
305
306 Strain fitness (log2 ratio) -2
-1
0
1
2 at 303.966 kb on - strand at 304.322 kb on - strand, within GFF288 at 304.375 kb on + strand, within GFF288 at 304.769 kb on - strand at 304.960 kb on + strand, within GFF289 at 304.960 kb on + strand, within GFF289 at 304.960 kb on + strand, within GFF289 at 304.960 kb on + strand, within GFF289 at 304.960 kb on + strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 305.041 kb on + strand, within GFF289 at 305.041 kb on + strand, within GFF289 at 305.041 kb on + strand, within GFF289 at 305.041 kb on + strand, within GFF289 at 305.042 kb on - strand, within GFF289 at 305.042 kb on - strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.579 kb on + strand, within GFF290 at 305.579 kb on + strand, within GFF290 at 305.580 kb on - strand, within GFF290 at 305.580 kb on - strand, within GFF290 at 305.580 kb on - strand, within GFF290 at 305.580 kb on - strand, within GFF290 at 305.580 kb on - strand, within GFF290 at 305.707 kb on + strand, within GFF290 at 305.721 kb on - strand at 305.920 kb on + strand at 305.920 kb on + strand at 306.043 kb on + strand, within GFF291 at 306.043 kb on + strand, within GFF291 at 306.043 kb on + strand, within GFF291 at 306.044 kb on - strand, within GFF291 at 306.044 kb on - strand, within GFF291 at 306.130 kb on + strand, within GFF291 at 306.165 kb on - strand, within GFF291 at 306.217 kb on + strand, within GFF291 at 306.217 kb on + strand, within GFF291 at 306.217 kb on + strand, within GFF291 at 306.217 kb on + strand, within GFF291 at 306.218 kb on - strand, within GFF291 at 306.218 kb on - strand, within GFF291 at 306.218 kb on - strand, within GFF291 at 306.218 kb on - strand, within GFF291 at 306.221 kb on + strand, within GFF291 at 306.222 kb on - strand, within GFF291
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 303,966 - -0.6 304,322 - GFF288 0.50 +0.6 304,375 + GFF288 0.59 +0.1 304,769 - -0.3 304,960 + GFF289 0.39 +1.1 304,960 + GFF289 0.39 -0.3 304,960 + GFF289 0.39 +0.2 304,960 + GFF289 0.39 -0.8 304,960 + GFF289 0.39 +0.1 304,961 - GFF289 0.39 -0.2 304,961 - GFF289 0.39 +0.4 304,961 - GFF289 0.39 -2.1 304,961 - GFF289 0.39 -0.9 304,961 - GFF289 0.39 +0.2 304,961 - GFF289 0.39 +0.6 304,961 - GFF289 0.39 -0.5 304,961 - GFF289 0.39 -0.8 304,961 - GFF289 0.39 -0.0 304,961 - GFF289 0.39 +0.3 304,961 - GFF289 0.39 +0.6 304,961 - GFF289 0.39 +2.1 305,041 + GFF289 0.57 +0.5 305,041 + GFF289 0.57 -0.4 305,041 + GFF289 0.57 +0.5 305,041 + GFF289 0.57 +1.2 305,042 - GFF289 0.58 -0.2 305,042 - GFF289 0.58 -0.3 305,182 + GFF289 0.89 -1.1 305,182 + GFF289 0.89 -0.7 305,182 + GFF289 0.89 -0.3 305,182 + GFF289 0.89 +0.6 305,182 + GFF289 0.89 +0.8 305,182 + GFF289 0.89 +1.2 305,182 + GFF289 0.89 +0.3 305,182 + GFF289 0.89 -0.2 305,182 + GFF289 0.89 -0.1 305,183 - GFF289 0.89 +0.1 305,183 - GFF289 0.89 -0.8 305,183 - GFF289 0.89 -0.4 305,183 - GFF289 0.89 +0.2 305,183 - GFF289 0.89 +0.5 305,183 - GFF289 0.89 -0.3 305,183 - GFF289 0.89 -1.6 305,183 - GFF289 0.89 +0.3 305,183 - GFF289 0.89 -0.2 305,183 - GFF289 0.89 -0.8 305,579 + GFF290 0.62 -0.8 305,579 + GFF290 0.62 +0.5 305,580 - GFF290 0.62 -0.2 305,580 - GFF290 0.62 -0.2 305,580 - GFF290 0.62 +0.3 305,580 - GFF290 0.62 -0.0 305,580 - GFF290 0.62 +1.1 305,707 + GFF290 0.88 +0.5 305,721 - -0.2 305,920 + -0.0 305,920 + -0.5 306,043 + GFF291 0.15 +0.5 306,043 + GFF291 0.15 -0.9 306,043 + GFF291 0.15 -1.2 306,044 - GFF291 0.15 -0.4 306,044 - GFF291 0.15 -1.3 306,130 + GFF291 0.22 -0.7 306,165 - GFF291 0.24 -0.3 306,217 + GFF291 0.28 -0.5 306,217 + GFF291 0.28 +0.3 306,217 + GFF291 0.28 +0.9 306,217 + GFF291 0.28 +0.4 306,218 - GFF291 0.28 +0.1 306,218 - GFF291 0.28 -0.0 306,218 - GFF291 0.28 -0.6 306,218 - GFF291 0.28 -0.7 306,221 + GFF291 0.28 +0.3 306,222 - GFF291 0.28 +0.1
Or see this region's nucleotide sequence