Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2868 and GFF2869 are separated by 84 nucleotides GFF2869 and GFF2870 are separated by 31 nucleotides GFF2870 and GFF2871 are separated by 162 nucleotides GFF2871 and GFF2872 are separated by 16 nucleotides
GFF2868 - 2-keto-4-carboxy-3-hexenedioate hydratase, at 585,290 to 586,237
GFF2868
GFF2869 - hypothetical protein, at 586,322 to 587,158
GFF2869
GFF2870 - putative protein YisK, at 587,190 to 588,071
GFF2870
GFF2871 - HTH-type transcriptional repressor GlaR, at 588,234 to 588,905
GFF2871
GFF2872 - Succinate semialdehyde dehydrogenase [NAD(P)+] Sad, at 588,922 to 590,292
GFF2872
Position (kb) 587
588
589 Strain fitness (log2 ratio) -1
0
1 at 586.197 kb on + strand at 586.198 kb on - strand at 586.555 kb on - strand, within GFF2869 at 586.555 kb on - strand, within GFF2869 at 586.626 kb on + strand, within GFF2869 at 586.626 kb on + strand, within GFF2869 at 586.626 kb on + strand, within GFF2869 at 586.626 kb on + strand, within GFF2869 at 586.917 kb on + strand, within GFF2869 at 586.917 kb on + strand, within GFF2869 at 586.917 kb on + strand, within GFF2869 at 586.918 kb on - strand, within GFF2869 at 586.918 kb on - strand, within GFF2869 at 586.918 kb on - strand, within GFF2869 at 586.918 kb on - strand, within GFF2869 at 586.986 kb on + strand, within GFF2869 at 586.986 kb on + strand, within GFF2869 at 586.987 kb on - strand, within GFF2869 at 586.987 kb on - strand, within GFF2869 at 586.987 kb on - strand, within GFF2869 at 587.199 kb on - strand at 587.229 kb on - strand at 587.282 kb on - strand, within GFF2870 at 587.282 kb on - strand, within GFF2870 at 587.346 kb on + strand, within GFF2870 at 587.346 kb on + strand, within GFF2870 at 587.346 kb on + strand, within GFF2870 at 587.346 kb on + strand, within GFF2870 at 587.347 kb on - strand, within GFF2870 at 587.575 kb on + strand, within GFF2870 at 587.576 kb on - strand, within GFF2870 at 587.587 kb on + strand, within GFF2870 at 587.587 kb on + strand, within GFF2870 at 587.588 kb on - strand, within GFF2870 at 587.613 kb on - strand, within GFF2870 at 587.656 kb on + strand, within GFF2870 at 587.657 kb on - strand, within GFF2870 at 587.783 kb on - strand, within GFF2870 at 587.783 kb on - strand, within GFF2870 at 587.783 kb on - strand, within GFF2870 at 587.807 kb on - strand, within GFF2870 at 587.807 kb on - strand, within GFF2870 at 587.807 kb on - strand, within GFF2870 at 588.267 kb on + strand at 588.267 kb on + strand at 588.267 kb on + strand at 588.267 kb on + strand at 588.268 kb on - strand at 588.268 kb on - strand at 588.349 kb on - strand, within GFF2871 at 588.711 kb on + strand, within GFF2871 at 588.711 kb on + strand, within GFF2871 at 588.711 kb on + strand, within GFF2871 at 588.711 kb on + strand, within GFF2871 at 588.712 kb on - strand, within GFF2871 at 588.712 kb on - strand, within GFF2871 at 588.712 kb on - strand, within GFF2871 at 588.729 kb on + strand, within GFF2871 at 588.730 kb on - strand, within GFF2871 at 588.954 kb on + strand at 588.955 kb on - strand at 588.977 kb on + strand at 588.977 kb on + strand at 588.977 kb on + strand at 588.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 586,197 + +0.0 586,198 - -0.3 586,555 - GFF2869 0.28 +0.3 586,555 - GFF2869 0.28 -1.4 586,626 + GFF2869 0.36 -0.7 586,626 + GFF2869 0.36 -1.0 586,626 + GFF2869 0.36 -0.4 586,626 + GFF2869 0.36 -0.1 586,917 + GFF2869 0.71 +0.3 586,917 + GFF2869 0.71 +0.8 586,917 + GFF2869 0.71 -0.8 586,918 - GFF2869 0.71 +0.1 586,918 - GFF2869 0.71 -0.1 586,918 - GFF2869 0.71 -0.1 586,918 - GFF2869 0.71 -0.2 586,986 + GFF2869 0.79 -0.5 586,986 + GFF2869 0.79 -0.5 586,987 - GFF2869 0.79 -0.3 586,987 - GFF2869 0.79 +0.1 586,987 - GFF2869 0.79 -0.0 587,199 - +0.2 587,229 - -0.5 587,282 - GFF2870 0.10 +0.3 587,282 - GFF2870 0.10 -0.1 587,346 + GFF2870 0.18 -0.5 587,346 + GFF2870 0.18 -0.0 587,346 + GFF2870 0.18 -0.3 587,346 + GFF2870 0.18 -0.1 587,347 - GFF2870 0.18 +0.6 587,575 + GFF2870 0.44 -0.1 587,576 - GFF2870 0.44 +0.6 587,587 + GFF2870 0.45 +0.6 587,587 + GFF2870 0.45 -0.2 587,588 - GFF2870 0.45 -0.4 587,613 - GFF2870 0.48 +0.4 587,656 + GFF2870 0.53 -0.2 587,657 - GFF2870 0.53 -0.5 587,783 - GFF2870 0.67 +0.3 587,783 - GFF2870 0.67 +0.4 587,783 - GFF2870 0.67 -0.2 587,807 - GFF2870 0.70 -1.0 587,807 - GFF2870 0.70 -0.7 587,807 - GFF2870 0.70 -0.9 588,267 + +0.5 588,267 + -0.6 588,267 + -0.3 588,267 + +0.4 588,268 - +0.5 588,268 - -0.2 588,349 - GFF2871 0.17 -0.5 588,711 + GFF2871 0.71 -0.2 588,711 + GFF2871 0.71 +1.1 588,711 + GFF2871 0.71 -0.8 588,711 + GFF2871 0.71 +1.5 588,712 - GFF2871 0.71 +0.4 588,712 - GFF2871 0.71 +0.8 588,712 - GFF2871 0.71 +0.4 588,729 + GFF2871 0.74 -0.8 588,730 - GFF2871 0.74 +0.8 588,954 + -0.5 588,955 - +0.5 588,977 + +0.1 588,977 + +0.1 588,977 + -0.1 588,978 - -0.7
Or see this region's nucleotide sequence