Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2862 and GFF2863 are separated by 163 nucleotides GFF2863 and GFF2864 are separated by 17 nucleotides GFF2864 and GFF2865 are separated by 78 nucleotides
GFF2862 - Muconate cycloisomerase 1, at 577,109 to 578,293
GFF2862
GFF2863 - HTH-type transcriptional regulator BenM, at 578,457 to 579,398
GFF2863
GFF2864 - putative oxidoreductase, at 579,416 to 580,219
GFF2864
GFF2865 - 3-hydroxybenzoate transporter MhbT, at 580,298 to 581,650
GFF2865
Position (kb) 578
579
580 Strain fitness (log2 ratio) -2
-1
0
1 at 577.626 kb on + strand, within GFF2862 at 577.626 kb on + strand, within GFF2862 at 577.627 kb on - strand, within GFF2862 at 577.627 kb on - strand, within GFF2862 at 578.034 kb on + strand, within GFF2862 at 578.034 kb on + strand, within GFF2862 at 578.035 kb on - strand, within GFF2862 at 578.035 kb on - strand, within GFF2862 at 578.038 kb on + strand, within GFF2862 at 578.039 kb on - strand, within GFF2862 at 578.478 kb on + strand at 578.478 kb on + strand at 578.478 kb on + strand at 578.650 kb on - strand, within GFF2863 at 578.763 kb on + strand, within GFF2863 at 578.763 kb on + strand, within GFF2863 at 578.763 kb on + strand, within GFF2863 at 578.764 kb on - strand, within GFF2863 at 578.764 kb on - strand, within GFF2863 at 578.923 kb on + strand, within GFF2863 at 578.923 kb on + strand, within GFF2863 at 578.923 kb on + strand, within GFF2863 at 578.924 kb on - strand, within GFF2863 at 578.924 kb on - strand, within GFF2863 at 579.039 kb on + strand, within GFF2863 at 579.040 kb on - strand, within GFF2863 at 579.268 kb on - strand, within GFF2863 at 579.294 kb on + strand, within GFF2863 at 579.295 kb on - strand, within GFF2863 at 579.295 kb on - strand, within GFF2863 at 579.330 kb on + strand at 579.330 kb on + strand at 579.330 kb on + strand at 579.462 kb on + strand at 579.462 kb on + strand at 579.462 kb on + strand at 579.463 kb on - strand at 579.463 kb on - strand at 579.463 kb on - strand at 579.463 kb on - strand at 579.522 kb on + strand, within GFF2864 at 579.735 kb on + strand, within GFF2864 at 579.811 kb on - strand, within GFF2864 at 579.811 kb on - strand, within GFF2864 at 579.953 kb on + strand, within GFF2864 at 579.996 kb on + strand, within GFF2864 at 579.997 kb on - strand, within GFF2864
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 577,626 + GFF2862 0.44 +0.1 577,626 + GFF2862 0.44 +0.4 577,627 - GFF2862 0.44 -0.0 577,627 - GFF2862 0.44 +0.7 578,034 + GFF2862 0.78 +0.5 578,034 + GFF2862 0.78 -1.2 578,035 - GFF2862 0.78 +0.0 578,035 - GFF2862 0.78 +0.1 578,038 + GFF2862 0.78 -0.3 578,039 - GFF2862 0.78 +0.9 578,478 + -1.1 578,478 + +0.6 578,478 + +0.7 578,650 - GFF2863 0.20 -1.4 578,763 + GFF2863 0.32 -0.1 578,763 + GFF2863 0.32 -0.6 578,763 + GFF2863 0.32 -0.8 578,764 - GFF2863 0.33 -1.0 578,764 - GFF2863 0.33 +0.2 578,923 + GFF2863 0.49 +0.1 578,923 + GFF2863 0.49 +0.1 578,923 + GFF2863 0.49 -0.3 578,924 - GFF2863 0.50 +0.2 578,924 - GFF2863 0.50 -0.3 579,039 + GFF2863 0.62 -0.3 579,040 - GFF2863 0.62 -0.9 579,268 - GFF2863 0.86 -1.2 579,294 + GFF2863 0.89 -0.4 579,295 - GFF2863 0.89 +0.2 579,295 - GFF2863 0.89 +0.1 579,330 + -0.5 579,330 + -0.2 579,330 + +0.4 579,462 + -0.1 579,462 + +1.1 579,462 + +0.8 579,463 - +0.6 579,463 - -0.1 579,463 - +0.4 579,463 - -2.2 579,522 + GFF2864 0.13 +0.0 579,735 + GFF2864 0.40 -0.1 579,811 - GFF2864 0.49 +0.6 579,811 - GFF2864 0.49 -0.6 579,953 + GFF2864 0.67 -0.1 579,996 + GFF2864 0.72 +0.1 579,997 - GFF2864 0.72 +0.6
Or see this region's nucleotide sequence