Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2847 and GFF2848 are separated by 89 nucleotides GFF2848 and GFF2849 overlap by 4 nucleotides GFF2849 and GFF2850 are separated by 53 nucleotides GFF2850 and GFF2851 are separated by 56 nucleotides
GFF2847 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 558,678 to 559,427
GFF2847
GFF2848 - Apulose-4-phosphate transketolase subunit A, at 559,517 to 560,356
GFF2848
GFF2849 - Apulose-4-phosphate transketolase subunit B, at 560,353 to 561,390
GFF2849
GFF2850 - L-threonate dehydrogenase, at 561,444 to 562,322
GFF2850
GFF2851 - 2,3-diketo-L-gulonate-binding periplasmic protein YiaO, at 562,379 to 563,404
GFF2851
Position (kb) 560
561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 559.377 kb on + strand at 559.377 kb on + strand at 559.378 kb on - strand at 559.378 kb on - strand at 559.378 kb on - strand at 559.425 kb on + strand at 559.426 kb on - strand at 559.610 kb on + strand, within GFF2848 at 559.611 kb on - strand, within GFF2848 at 559.611 kb on - strand, within GFF2848 at 559.611 kb on - strand, within GFF2848 at 559.611 kb on - strand, within GFF2848 at 559.655 kb on + strand, within GFF2848 at 559.674 kb on - strand, within GFF2848 at 559.733 kb on + strand, within GFF2848 at 559.734 kb on - strand, within GFF2848 at 559.749 kb on - strand, within GFF2848 at 559.749 kb on - strand, within GFF2848 at 559.799 kb on + strand, within GFF2848 at 559.844 kb on + strand, within GFF2848 at 559.844 kb on + strand, within GFF2848 at 559.844 kb on + strand, within GFF2848 at 559.844 kb on + strand, within GFF2848 at 559.845 kb on - strand, within GFF2848 at 559.846 kb on + strand, within GFF2848 at 559.846 kb on + strand, within GFF2848 at 559.949 kb on + strand, within GFF2848 at 559.949 kb on + strand, within GFF2848 at 559.950 kb on - strand, within GFF2848 at 559.950 kb on - strand, within GFF2848 at 559.950 kb on - strand, within GFF2848 at 560.018 kb on + strand, within GFF2848 at 560.019 kb on - strand, within GFF2848 at 560.019 kb on - strand, within GFF2848 at 560.554 kb on + strand, within GFF2849 at 560.555 kb on - strand, within GFF2849 at 560.555 kb on - strand, within GFF2849 at 560.556 kb on + strand, within GFF2849 at 560.596 kb on + strand, within GFF2849 at 560.596 kb on + strand, within GFF2849 at 560.596 kb on + strand, within GFF2849 at 560.599 kb on + strand, within GFF2849 at 560.683 kb on + strand, within GFF2849 at 560.710 kb on + strand, within GFF2849 at 560.711 kb on - strand, within GFF2849 at 560.711 kb on - strand, within GFF2849 at 560.926 kb on + strand, within GFF2849 at 560.926 kb on + strand, within GFF2849 at 560.926 kb on + strand, within GFF2849 at 560.927 kb on - strand, within GFF2849 at 560.927 kb on - strand, within GFF2849 at 560.927 kb on - strand, within GFF2849 at 560.928 kb on + strand, within GFF2849 at 560.972 kb on - strand, within GFF2849 at 560.978 kb on - strand, within GFF2849 at 561.388 kb on + strand at 561.389 kb on - strand at 561.396 kb on + strand at 562.269 kb on - strand at 562.296 kb on + strand at 562.306 kb on + strand at 562.307 kb on - strand at 562.320 kb on + strand at 562.320 kb on + strand at 562.321 kb on - strand at 562.326 kb on + strand at 562.364 kb on + strand at 562.365 kb on - strand at 562.365 kb on - strand at 562.365 kb on - strand at 562.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 559,377 + -0.7 559,377 + -0.5 559,378 - -0.5 559,378 - +0.3 559,378 - +0.4 559,425 + +0.9 559,426 - -0.5 559,610 + GFF2848 0.11 -0.4 559,611 - GFF2848 0.11 +0.2 559,611 - GFF2848 0.11 -0.6 559,611 - GFF2848 0.11 +0.6 559,611 - GFF2848 0.11 +0.7 559,655 + GFF2848 0.16 +0.5 559,674 - GFF2848 0.19 +0.0 559,733 + GFF2848 0.26 +0.5 559,734 - GFF2848 0.26 -1.0 559,749 - GFF2848 0.28 -0.2 559,749 - GFF2848 0.28 +0.4 559,799 + GFF2848 0.34 -1.3 559,844 + GFF2848 0.39 -1.0 559,844 + GFF2848 0.39 +0.2 559,844 + GFF2848 0.39 +0.5 559,844 + GFF2848 0.39 +0.5 559,845 - GFF2848 0.39 +0.8 559,846 + GFF2848 0.39 +0.3 559,846 + GFF2848 0.39 -0.5 559,949 + GFF2848 0.51 +1.5 559,949 + GFF2848 0.51 -0.6 559,950 - GFF2848 0.52 +0.6 559,950 - GFF2848 0.52 +0.5 559,950 - GFF2848 0.52 -0.0 560,018 + GFF2848 0.60 +0.5 560,019 - GFF2848 0.60 -0.5 560,019 - GFF2848 0.60 -0.1 560,554 + GFF2849 0.19 +0.1 560,555 - GFF2849 0.19 -0.3 560,555 - GFF2849 0.19 +0.2 560,556 + GFF2849 0.20 +0.1 560,596 + GFF2849 0.23 +0.4 560,596 + GFF2849 0.23 -0.4 560,596 + GFF2849 0.23 +0.3 560,599 + GFF2849 0.24 -0.2 560,683 + GFF2849 0.32 +0.1 560,710 + GFF2849 0.34 +0.3 560,711 - GFF2849 0.34 -0.2 560,711 - GFF2849 0.34 -1.2 560,926 + GFF2849 0.55 -0.4 560,926 + GFF2849 0.55 -0.9 560,926 + GFF2849 0.55 -1.0 560,927 - GFF2849 0.55 +0.3 560,927 - GFF2849 0.55 -0.4 560,927 - GFF2849 0.55 -0.5 560,928 + GFF2849 0.55 -1.0 560,972 - GFF2849 0.60 -1.0 560,978 - GFF2849 0.60 +0.4 561,388 + +0.0 561,389 - -0.9 561,396 + -0.7 562,269 - +0.8 562,296 + -0.9 562,306 + -1.3 562,307 - -0.0 562,320 + -2.9 562,320 + +1.5 562,321 - +0.3 562,326 + +0.4 562,364 + +0.2 562,365 - +0.1 562,365 - -0.4 562,365 - +0.5 562,381 - -0.5
Or see this region's nucleotide sequence