Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2841 and GFF2842 are separated by 11 nucleotides GFF2842 and GFF2843 are separated by 3 nucleotides GFF2843 and GFF2844 are separated by 59 nucleotides
GFF2841 - Vitamin B12 import ATP-binding protein BtuD, at 551,471 to 553,717
GFF2841
GFF2842 - High-affinity branched-chain amino acid transport system permease protein LivH, at 553,729 to 554,619
GFF2842
GFF2843 - hypothetical protein, at 554,623 to 555,687
GFF2843
GFF2844 - Solute-binding protein, at 555,747 to 556,745
GFF2844
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1 at 553.682 kb on + strand at 553.790 kb on - strand at 553.790 kb on - strand at 553.790 kb on - strand at 554.012 kb on - strand, within GFF2842 at 554.216 kb on - strand, within GFF2842 at 554.216 kb on - strand, within GFF2842 at 554.469 kb on - strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.500 kb on + strand, within GFF2842 at 554.501 kb on - strand, within GFF2842 at 554.501 kb on - strand, within GFF2842 at 554.545 kb on + strand at 554.659 kb on + strand at 554.659 kb on + strand at 554.659 kb on + strand at 554.659 kb on + strand at 554.659 kb on + strand at 554.660 kb on - strand at 554.660 kb on - strand at 554.761 kb on + strand, within GFF2843 at 554.761 kb on + strand, within GFF2843 at 554.761 kb on + strand, within GFF2843 at 554.879 kb on + strand, within GFF2843 at 554.879 kb on + strand, within GFF2843 at 554.880 kb on - strand, within GFF2843 at 554.887 kb on + strand, within GFF2843 at 554.887 kb on + strand, within GFF2843 at 554.887 kb on + strand, within GFF2843 at 555.016 kb on + strand, within GFF2843 at 555.016 kb on + strand, within GFF2843 at 555.017 kb on - strand, within GFF2843 at 555.337 kb on + strand, within GFF2843 at 555.337 kb on + strand, within GFF2843 at 555.337 kb on + strand, within GFF2843 at 555.337 kb on + strand, within GFF2843 at 555.338 kb on - strand, within GFF2843 at 555.373 kb on + strand, within GFF2843 at 555.373 kb on + strand, within GFF2843 at 555.373 kb on + strand, within GFF2843 at 555.883 kb on - strand, within GFF2844 at 556.143 kb on - strand, within GFF2844 at 556.143 kb on - strand, within GFF2844 at 556.180 kb on + strand, within GFF2844 at 556.281 kb on + strand, within GFF2844 at 556.281 kb on + strand, within GFF2844 at 556.282 kb on - strand, within GFF2844 at 556.282 kb on - strand, within GFF2844 at 556.461 kb on + strand, within GFF2844 at 556.461 kb on + strand, within GFF2844 at 556.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 553,682 + -0.2 553,790 - +0.1 553,790 - +0.5 553,790 - -0.3 554,012 - GFF2842 0.32 +0.1 554,216 - GFF2842 0.55 +0.2 554,216 - GFF2842 0.55 +0.4 554,469 - GFF2842 0.83 +0.9 554,500 + GFF2842 0.87 -0.0 554,500 + GFF2842 0.87 +0.6 554,500 + GFF2842 0.87 -0.7 554,500 + GFF2842 0.87 -1.7 554,500 + GFF2842 0.87 +0.4 554,500 + GFF2842 0.87 -0.5 554,501 - GFF2842 0.87 -0.0 554,501 - GFF2842 0.87 +0.9 554,545 + +1.5 554,659 + -1.1 554,659 + -1.1 554,659 + -0.4 554,659 + +0.0 554,659 + +1.0 554,660 - -1.0 554,660 - +0.0 554,761 + GFF2843 0.13 +0.5 554,761 + GFF2843 0.13 +0.2 554,761 + GFF2843 0.13 +0.1 554,879 + GFF2843 0.24 -0.2 554,879 + GFF2843 0.24 +0.9 554,880 - GFF2843 0.24 +0.5 554,887 + GFF2843 0.25 +0.2 554,887 + GFF2843 0.25 -0.7 554,887 + GFF2843 0.25 +0.0 555,016 + GFF2843 0.37 +0.1 555,016 + GFF2843 0.37 -0.1 555,017 - GFF2843 0.37 -0.3 555,337 + GFF2843 0.67 +0.8 555,337 + GFF2843 0.67 -1.1 555,337 + GFF2843 0.67 -0.2 555,337 + GFF2843 0.67 +0.1 555,338 - GFF2843 0.67 +0.1 555,373 + GFF2843 0.70 -0.8 555,373 + GFF2843 0.70 -0.2 555,373 + GFF2843 0.70 -0.1 555,883 - GFF2844 0.14 +0.8 556,143 - GFF2844 0.40 +0.1 556,143 - GFF2844 0.40 +0.7 556,180 + GFF2844 0.43 -0.0 556,281 + GFF2844 0.53 +0.1 556,281 + GFF2844 0.53 -0.4 556,282 - GFF2844 0.54 +1.2 556,282 - GFF2844 0.54 -0.1 556,461 + GFF2844 0.71 +0.1 556,461 + GFF2844 0.71 -2.4 556,683 + -0.8
Or see this region's nucleotide sequence